Protein : Qrob_P0104830.2 Q. robur
Protein Identifier  ? Qrob_P0104830.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) 4.2.3.77 - (+)-germacrene D synthase. Code Enzyme  EC:4.2.3.77
Gene Prediction Quality  validated Protein length 

Sequence

Length: 240  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0000287 magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
GO:0010333 terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
GO:0016829 lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100267551 1 239 + 239 Gaps:72 49.26 672 59.21 2e-80 (-)-germacrene D synthase-like
blastp_kegg lcl|vvi:100241877 1 239 + 239 Gaps:39 44.36 559 56.45 8e-79 (-)-germacrene D synthase-like
blastp_kegg lcl|vvi:100264159 1 239 + 239 Gaps:39 44.36 559 57.26 1e-78 (-)-germacrene D synthase-like
blastp_kegg lcl|vvi:100257265 1 239 + 239 Gaps:39 44.52 557 54.44 3e-78 (E)-beta-caryophyllene synthase
blastp_kegg lcl|pop:POPTR_0015s09710g 1 239 + 239 Gaps:39 44.85 553 55.24 8e-78 POPTRDRAFT_575250 hypothetical protein
blastp_kegg lcl|vvi:100255553 1 239 + 239 Gaps:39 44.21 561 54.84 6e-77 (-)-germacrene D synthase-like
blastp_kegg lcl|cit:102606948 1 239 + 239 Gaps:39 44.05 563 54.03 8e-76 (-)-germacrene D synthase-like
blastp_kegg lcl|pop:POPTR_0015s05270g 1 239 + 239 Gaps:39 44.77 554 53.63 2e-75 hypothetical protein
blastp_kegg lcl|cit:102612857 1 239 + 239 Gaps:41 40.32 620 53.60 3e-74 (-)-germacrene D synthase-like
blastp_kegg lcl|rcu:RCOM_0890850 1 239 + 239 Gaps:39 45.09 550 53.63 2e-73 (+)-delta-cadinene synthase isozyme A putative (EC:4.2.3.13)
blastp_pdb 3g4f_B 1 239 + 239 Gaps:39 44.77 554 43.55 1e-56 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4f_A 1 239 + 239 Gaps:39 44.77 554 43.55 1e-56 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_B 1 239 + 239 Gaps:39 44.77 554 43.55 1e-56 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_A 1 239 + 239 Gaps:39 44.77 554 43.55 1e-56 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3m00_A 1 239 + 239 Gaps:40 44.91 550 40.08 3e-39 mol:protein length:550 Aristolochene synthase
blastp_pdb 3lz9_A 1 239 + 239 Gaps:40 44.91 550 40.08 3e-39 mol:protein length:550 Aristolochene synthase
blastp_pdb 5eas_A 1 239 + 239 Gaps:40 45.07 548 40.08 4e-39 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 5eat_A 1 239 + 239 Gaps:40 45.07 548 40.08 4e-39 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 3m02_A 1 239 + 239 Gaps:40 44.91 550 40.08 4e-39 mol:protein length:550 Aristolochene synthase
blastp_pdb 3m01_A 1 239 + 239 Gaps:40 44.91 550 40.08 4e-39 mol:protein length:550 Aristolochene synthase
blastp_uniprot_sprot sp|B9SCB6|TPS2_RICCO 1 239 + 239 Gaps:39 45.09 550 53.63 6e-75 Probable terpene synthase 2 OS Ricinus communis GN TPS2 PE 3 SV 1
blastp_uniprot_sprot sp|Q6Q3H3|TPSGD_VITVI 1 239 + 239 Gaps:39 44.52 557 53.23 8e-74 (-)-germacrene D synthase OS Vitis vinifera GN VIT_19s0014g04930 PE 1 SV 1
blastp_uniprot_sprot sp|F6M8H7|SMST_SANMU 1 239 + 239 Gaps:39 44.13 562 47.18 1e-68 Probable sesquiterpene synthase OS Santalum murrayanum GN STPS PE 3 SV 1
blastp_uniprot_sprot sp|B5A435|STPS1_SANAL 1 239 + 239 Gaps:39 44.36 559 47.98 4e-68 Sesquiterpene synthase OS Santalum album PE 1 SV 1
blastp_uniprot_sprot sp|F6M8H4|SAST_SANAL 1 239 + 239 Gaps:39 44.36 559 47.58 2e-66 Probable sesquiterpene synthase OS Santalum album GN SesquiTPS1 PE 3 SV 1
blastp_uniprot_sprot sp|E3W208|SPISS_SANSP 1 239 + 239 Gaps:39 44.13 562 47.58 7e-66 Sesquiterpene synthase OS Santalum spicatum PE 2 SV 1
blastp_uniprot_sprot sp|F6M8H5|SAUST_SANAS 1 239 + 239 Gaps:39 44.13 562 46.77 8e-66 Probable sesquiterpene synthase OS Santalum austrocaledonicum GN SesquiTPS PE 3 SV 1
blastp_uniprot_sprot sp|E3W207|SAUSS_SANAS 1 239 + 239 Gaps:39 44.36 559 48.39 2e-65 Sesquiterpene synthase OS Santalum austrocaledonicum PE 2 SV 1
blastp_uniprot_sprot sp|F6M8H6|SPIST_SANSP 1 239 + 239 Gaps:39 44.13 562 47.18 7e-65 Probable sesquiterpene synthase OS Santalum spicatum GN SesquiTPS PE 3 SV 1
blastp_uniprot_sprot sp|Q6Q3H2|TPSVS_VITVI 1 238 + 238 Gaps:39 44.42 556 51.42 1e-63 Valencene synthase OS Vitis vinifera GN ValCS PE 1 SV 1

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 1 239 239 G3DSA:1.10.600.10 none none IPR008949
PANTHER 1 239 239 PTHR31225:SF1 none none none
Pfam 2 210 209 PF03936 none Terpene synthase family, metal binding domain IPR005630
PANTHER 1 239 239 PTHR31225 none none none
SUPERFAMILY 2 238 237 SSF48576 none none IPR008949

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 20   Secretory pathway 4 0.668 0.073 NON-PLANT 20