Protein : Qrob_P0104820.2 Q. robur
Protein Identifier  ? Qrob_P0104820.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=20) 4.2.3.22 - Germacradienol synthase. Code Enzyme  EC:4.2.3.22, EC:4.2.3.75
Gene Prediction Quality  validated Protein length 

Sequence

Length: 560  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0000287 magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
GO:0010333 terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
GO:0016829 lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100257265 1 559 + 559 Gaps:6 100.00 557 62.12 0.0 (E)-beta-caryophyllene synthase
blastp_kegg lcl|vvi:100232954 3 559 + 557 Gaps:5 99.46 557 61.19 0.0 (-)-germacrene D synthase (EC:4.2.3.22 4.2.3.75)
blastp_kegg lcl|vvi:100255553 5 559 + 555 Gaps:16 98.93 561 58.92 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|tcc:TCM_031134 1 559 + 559 Gaps:7 100.00 566 57.42 0.0 Delta-cadinene synthase isozyme A putative
blastp_kegg lcl|vvi:100264159 1 559 + 559 Gaps:4 100.00 559 58.14 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|rcu:RCOM_0890850 5 557 + 553 Gaps:5 100.00 550 58.73 0.0 (+)-delta-cadinene synthase isozyme A putative (EC:4.2.3.13)
blastp_kegg lcl|pop:POPTR_0015s09710g 1 559 + 559 Gaps:8 100.00 553 56.78 0.0 POPTRDRAFT_575250 hypothetical protein
blastp_kegg lcl|pop:POPTR_0015s05270g 1 559 + 559 Gaps:13 100.00 554 57.58 0.0 hypothetical protein
blastp_kegg lcl|cit:102606948 1 559 + 559 Gaps:10 100.00 563 57.90 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|vvi:100241877 1 559 + 559 Gaps:4 100.00 559 57.25 0.0 (-)-germacrene D synthase-like
blastp_pdb 3g4f_B 1 559 + 559 Gaps:7 100.00 554 51.81 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4f_A 1 559 + 559 Gaps:7 100.00 554 51.81 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_B 1 559 + 559 Gaps:7 100.00 554 51.81 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_A 1 559 + 559 Gaps:7 100.00 554 51.81 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3m02_A 6 559 + 554 Gaps:9 99.82 550 48.63 0.0 mol:protein length:550 Aristolochene synthase
blastp_pdb 3m01_A 6 559 + 554 Gaps:9 99.82 550 48.63 0.0 mol:protein length:550 Aristolochene synthase
blastp_pdb 3m00_A 6 559 + 554 Gaps:9 99.82 550 48.45 2e-180 mol:protein length:550 Aristolochene synthase
blastp_pdb 3lz9_A 6 559 + 554 Gaps:9 99.82 550 48.45 2e-180 mol:protein length:550 Aristolochene synthase
blastp_pdb 5eas_A 7 559 + 553 Gaps:9 100.00 548 48.54 4e-180 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 5eat_A 7 559 + 553 Gaps:9 100.00 548 48.54 5e-180 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_uniprot_sprot sp|Q6Q3H3|TPSGD_VITVI 3 559 + 557 Gaps:5 99.46 557 61.19 0.0 (-)-germacrene D synthase OS Vitis vinifera GN VIT_19s0014g04930 PE 1 SV 1
blastp_uniprot_sprot sp|B9SCB6|TPS2_RICCO 5 557 + 553 Gaps:5 100.00 550 58.73 0.0 Probable terpene synthase 2 OS Ricinus communis GN TPS2 PE 3 SV 1
blastp_uniprot_sprot sp|F6M8H7|SMST_SANMU 2 559 + 558 Gaps:2 99.64 562 53.93 0.0 Probable sesquiterpene synthase OS Santalum murrayanum GN STPS PE 3 SV 1
blastp_uniprot_sprot sp|F6M8H4|SAST_SANAL 21 559 + 539 Gaps:6 96.78 559 55.82 0.0 Probable sesquiterpene synthase OS Santalum album GN SesquiTPS1 PE 3 SV 1
blastp_uniprot_sprot sp|B5A435|STPS1_SANAL 18 559 + 542 Gaps:4 97.32 559 55.88 0.0 Sesquiterpene synthase OS Santalum album PE 1 SV 1
blastp_uniprot_sprot sp|F6M8H5|SAUST_SANAS 2 559 + 558 Gaps:6 99.64 562 54.29 0.0 Probable sesquiterpene synthase OS Santalum austrocaledonicum GN SesquiTPS PE 3 SV 1
blastp_uniprot_sprot sp|E3W208|SPISS_SANSP 2 559 + 558 Gaps:6 99.64 562 54.29 0.0 Sesquiterpene synthase OS Santalum spicatum PE 2 SV 1
blastp_uniprot_sprot sp|E3W207|SAUSS_SANAS 18 559 + 542 Gaps:4 97.32 559 55.51 0.0 Sesquiterpene synthase OS Santalum austrocaledonicum PE 2 SV 1
blastp_uniprot_sprot sp|F6M8H6|SPIST_SANSP 2 559 + 558 Gaps:6 99.64 562 53.93 0.0 Probable sesquiterpene synthase OS Santalum spicatum GN SesquiTPS PE 3 SV 1
blastp_uniprot_sprot sp|Q6Q3H2|TPSVS_VITVI 1 557 + 557 Gaps:6 99.82 556 56.04 0.0 Valencene synthase OS Vitis vinifera GN ValCS PE 1 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 247 558 312 G3DSA:1.10.600.10 none none IPR008949
Pfam 31 206 176 PF01397 none Terpene synthase, N-terminal domain IPR001906
PANTHER 1 559 559 PTHR31225:SF1 none none none
Pfam 236 504 269 PF03936 none Terpene synthase family, metal binding domain IPR005630
SUPERFAMILY 232 559 328 SSF48576 none none IPR008949
SUPERFAMILY 28 232 205 SSF48239 none none IPR008930
Gene3D 50 246 197 G3DSA:1.50.30.10 none none IPR001906
PANTHER 1 559 559 PTHR31225 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 23   Mitochondrion 5 0.042 0.582 NON-PLANT 23