Protein : Qrob_P0104760.2 Q. robur
Protein Identifier  ? Qrob_P0104760.2 Organism . Name  Quercus robur
Score  39.0 Score Type  egn
Protein Description  (M=20) 4.2.3.22 - Germacradienol synthase. Code Enzyme  EC:4.2.3.22, EC:4.2.3.75
Gene Prediction Quality  validated Protein length 

Sequence

Length: 226  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0000287 magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
GO:0010333 terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
GO:0016829 lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100264159 3 225 + 223 Gaps:86 43.11 559 52.70 1e-61 (-)-germacrene D synthase-like
blastp_kegg lcl|vvi:100267551 3 225 + 223 Gaps:138 47.17 672 55.21 1e-60 (-)-germacrene D synthase-like
blastp_kegg lcl|vvi:100241877 3 225 + 223 Gaps:86 43.11 559 51.45 2e-60 (-)-germacrene D synthase-like
blastp_kegg lcl|pop:POPTR_0015s09710g 3 225 + 223 Gaps:86 43.58 553 49.38 6e-59 POPTRDRAFT_575250 hypothetical protein
blastp_kegg lcl|vvi:100255553 3 225 + 223 Gaps:86 42.96 561 48.96 1e-58 (-)-germacrene D synthase-like
blastp_kegg lcl|vvi:100257265 3 225 + 223 Gaps:86 43.27 557 47.72 7e-58 (E)-beta-caryophyllene synthase
blastp_kegg lcl|cit:102606948 3 224 + 222 Gaps:86 42.63 563 48.33 2e-57 (-)-germacrene D synthase-like
blastp_kegg lcl|pop:POPTR_0015s05270g 3 224 + 222 Gaps:86 43.32 554 48.33 2e-57 hypothetical protein
blastp_kegg lcl|cit:102612857 3 224 + 222 Gaps:84 39.03 620 47.52 7e-57 (-)-germacrene D synthase-like
blastp_kegg lcl|rcu:RCOM_0890850 3 225 + 223 Gaps:86 43.82 550 48.13 3e-56 (+)-delta-cadinene synthase isozyme A putative (EC:4.2.3.13)
blastp_pdb 3g4f_B 3 225 + 223 Gaps:86 43.50 554 40.25 5e-45 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4f_A 3 225 + 223 Gaps:86 43.50 554 40.25 5e-45 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_B 3 225 + 223 Gaps:86 43.50 554 40.25 5e-45 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_A 3 225 + 223 Gaps:86 43.50 554 40.25 5e-45 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 1hxa_A 4 225 + 222 Gaps:87 43.61 548 38.08 2e-32 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 1hx9_A 4 225 + 222 Gaps:87 43.61 548 38.08 2e-32 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 5eas_A 4 225 + 222 Gaps:87 43.61 548 38.08 2e-32 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 5eat_A 4 225 + 222 Gaps:87 43.61 548 38.08 2e-32 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 3m02_A 4 225 + 222 Gaps:87 43.45 550 38.08 2e-32 mol:protein length:550 Aristolochene synthase
blastp_pdb 3m01_A 4 225 + 222 Gaps:87 43.45 550 38.08 2e-32 mol:protein length:550 Aristolochene synthase
blastp_uniprot_sprot sp|B9SCB6|TPS2_RICCO 3 225 + 223 Gaps:86 43.82 550 48.13 1e-57 Probable terpene synthase 2 OS Ricinus communis GN TPS2 PE 3 SV 1
blastp_uniprot_sprot sp|Q6Q3H3|TPSGD_VITVI 3 225 + 223 Gaps:82 43.27 557 46.89 2e-56 (-)-germacrene D synthase OS Vitis vinifera GN VIT_19s0014g04930 PE 1 SV 1
blastp_uniprot_sprot sp|F6M8H7|SMST_SANMU 3 225 + 223 Gaps:86 42.88 562 42.74 4e-52 Probable sesquiterpene synthase OS Santalum murrayanum GN STPS PE 3 SV 1
blastp_uniprot_sprot sp|B5A435|STPS1_SANAL 3 224 + 222 Gaps:86 42.93 559 42.50 1e-50 Sesquiterpene synthase OS Santalum album PE 1 SV 1
blastp_uniprot_sprot sp|E3W207|SAUSS_SANAS 3 224 + 222 Gaps:86 42.93 559 44.17 1e-49 Sesquiterpene synthase OS Santalum austrocaledonicum PE 2 SV 1
blastp_uniprot_sprot sp|E3W208|SPISS_SANSP 3 225 + 223 Gaps:86 42.88 562 43.15 5e-49 Sesquiterpene synthase OS Santalum spicatum PE 2 SV 1
blastp_uniprot_sprot sp|F6M8H4|SAST_SANAL 3 225 + 223 Gaps:86 43.11 559 41.91 5e-49 Probable sesquiterpene synthase OS Santalum album GN SesquiTPS1 PE 3 SV 1
blastp_uniprot_sprot sp|Q6Q3H2|TPSVS_VITVI 5 224 + 220 Gaps:86 42.81 556 47.06 1e-48 Valencene synthase OS Vitis vinifera GN ValCS PE 1 SV 1
blastp_uniprot_sprot sp|F6M8H6|SPIST_SANSP 3 225 + 223 Gaps:86 42.88 562 42.74 3e-48 Probable sesquiterpene synthase OS Santalum spicatum GN SesquiTPS PE 3 SV 1
blastp_uniprot_sprot sp|F6M8H5|SAUST_SANAS 3 225 + 223 Gaps:86 42.88 562 41.49 4e-48 Probable sesquiterpene synthase OS Santalum austrocaledonicum GN SesquiTPS PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 3 51 49 PTHR31225:SF1 none none none
PANTHER 84 225 142 PTHR31225:SF1 none none none
Gene3D 125 195 71 G3DSA:1.10.600.10 none none IPR008949
Pfam 4 195 192 PF03936 none Terpene synthase family, metal binding domain IPR005630
PANTHER 84 225 142 PTHR31225 none none none
PANTHER 3 51 49 PTHR31225 none none none
Gene3D 82 123 42 G3DSA:1.10.600.10 none none IPR008949
Gene3D 3 49 47 G3DSA:1.10.600.10 none none IPR008949
SUPERFAMILY 4 44 41 SSF48576 none none IPR008949
SUPERFAMILY 77 218 142 SSF48576 none none IPR008949

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18

0 Targeting