Protein : Qrob_P0104710.2 Q. robur
Protein Identifier  ? Qrob_P0104710.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=20) 4.2.3.22 - Germacradienol synthase. Code Enzyme  EC:4.2.3.22, EC:4.2.3.75
Gene Prediction Quality  validated Protein length 

Sequence

Length: 184  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0000287 magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
GO:0010333 terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
GO:0016829 lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100267551 1 183 + 183 Gaps:33 31.85 672 55.61 3e-71 (-)-germacrene D synthase-like
blastp_kegg lcl|vvi:100264159 1 183 + 183 Gaps:33 38.28 559 55.14 3e-67 (-)-germacrene D synthase-like
blastp_kegg lcl|vvi:100241877 1 183 + 183 Gaps:33 38.28 559 53.27 5e-65 (-)-germacrene D synthase-like
blastp_kegg lcl|tcc:TCM_031143 1 183 + 183 Gaps:34 38.60 557 51.63 6e-64 Delta-cadinene synthase isozyme A
blastp_kegg lcl|pop:POPTR_0015s09710g 1 183 + 183 Gaps:33 38.70 553 48.60 2e-63 POPTRDRAFT_575250 hypothetical protein
blastp_kegg lcl|vvi:100255553 1 183 + 183 Gaps:33 38.15 561 50.00 3e-63 (-)-germacrene D synthase-like
blastp_kegg lcl|vvi:100232954 1 183 + 183 Gaps:33 38.42 557 49.53 4e-63 (-)-germacrene D synthase (EC:4.2.3.22 4.2.3.75)
blastp_kegg lcl|tcc:TCM_031108 1 182 + 182 Gaps:34 38.42 557 51.87 7e-63 Delta-cadinene synthase isozyme A putative
blastp_kegg lcl|vvi:100257265 1 183 + 183 Gaps:33 38.42 557 49.53 8e-63 (E)-beta-caryophyllene synthase
blastp_kegg lcl|pop:POPTR_0015s05270g 1 183 + 183 Gaps:33 38.63 554 47.20 5e-61 hypothetical protein
blastp_pdb 3g4f_B 1 183 + 183 Gaps:33 38.63 554 40.65 1e-48 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4f_A 1 183 + 183 Gaps:33 38.63 554 40.65 1e-48 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_B 1 183 + 183 Gaps:33 38.63 554 40.65 1e-48 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_A 1 183 + 183 Gaps:33 38.63 554 40.65 1e-48 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3m00_A 1 183 + 183 Gaps:35 38.91 550 35.05 2e-25 mol:protein length:550 Aristolochene synthase
blastp_pdb 3lz9_A 1 183 + 183 Gaps:35 38.91 550 35.05 2e-25 mol:protein length:550 Aristolochene synthase
blastp_pdb 5eau_A 1 183 + 183 Gaps:35 39.05 548 35.05 3e-25 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 5eas_A 1 183 + 183 Gaps:35 39.05 548 35.05 3e-25 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 3m02_A 1 183 + 183 Gaps:35 38.91 550 35.05 3e-25 mol:protein length:550 Aristolochene synthase
blastp_pdb 3m01_A 1 183 + 183 Gaps:35 38.91 550 35.05 3e-25 mol:protein length:550 Aristolochene synthase
blastp_uniprot_sprot sp|Q6Q3H3|TPSGD_VITVI 1 183 + 183 Gaps:33 38.42 557 49.53 1e-64 (-)-germacrene D synthase OS Vitis vinifera GN VIT_19s0014g04930 PE 1 SV 1
blastp_uniprot_sprot sp|B9SCB6|TPS2_RICCO 1 180 + 180 Gaps:33 38.36 550 50.24 4e-62 Probable terpene synthase 2 OS Ricinus communis GN TPS2 PE 3 SV 1
blastp_uniprot_sprot sp|F6M8H7|SMST_SANMU 1 181 + 181 Gaps:33 37.72 562 44.34 3e-57 Probable sesquiterpene synthase OS Santalum murrayanum GN STPS PE 3 SV 1
blastp_uniprot_sprot sp|B5A435|STPS1_SANAL 1 181 + 181 Gaps:33 37.92 559 44.81 2e-56 Sesquiterpene synthase OS Santalum album PE 1 SV 1
blastp_uniprot_sprot sp|F6M8H4|SAST_SANAL 1 181 + 181 Gaps:33 37.92 559 43.87 4e-56 Probable sesquiterpene synthase OS Santalum album GN SesquiTPS1 PE 3 SV 1
blastp_uniprot_sprot sp|F6M8H5|SAUST_SANAS 1 181 + 181 Gaps:33 37.72 562 43.87 2e-55 Probable sesquiterpene synthase OS Santalum austrocaledonicum GN SesquiTPS PE 3 SV 1
blastp_uniprot_sprot sp|E3W208|SPISS_SANSP 1 181 + 181 Gaps:33 37.72 562 43.87 5e-54 Sesquiterpene synthase OS Santalum spicatum PE 2 SV 1
blastp_uniprot_sprot sp|E3W207|SAUSS_SANAS 1 181 + 181 Gaps:33 37.92 559 44.34 1e-53 Sesquiterpene synthase OS Santalum austrocaledonicum PE 2 SV 1
blastp_uniprot_sprot sp|O23945|PINS_FRAVE 1 183 + 183 Gaps:33 38.49 556 43.93 3e-53 (-)-alpha-pinene synthase OS Fragaria vesca PE 1 SV 2
blastp_uniprot_sprot sp|F6M8H6|SPIST_SANSP 1 181 + 181 Gaps:33 37.72 562 43.40 5e-53 Probable sesquiterpene synthase OS Santalum spicatum GN SesquiTPS PE 3 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 183 183 PTHR31225:SF1 none none none
Gene3D 1 117 117 G3DSA:1.10.600.10 none none IPR008949
Gene3D 118 182 65 G3DSA:1.10.600.10 none none IPR008949
Pfam 1 119 119 PF03936 none Terpene synthase family, metal binding domain IPR005630
PANTHER 1 183 183 PTHR31225 none none none
SUPERFAMILY 1 181 181 SSF48576 none none IPR008949

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18

0 Targeting