7 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0003677 | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| GO:0005524 | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| GO:0006281 | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
| GO:0008094 | DNA-dependent ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. |
| GO:0000724 | double-strand break repair via homologous recombination | The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. |
| GO:0005657 | replication fork | The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes. |
| GO:0033063 | Rad51B-Rad51C-Rad51D-XRCC2 complex | A DNA recombinase mediator complex that contains the Rad51 paralogs RAD51B, RAD51C, RAD51D, and XRCC2, or orthologs thereof. |
13 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pper:PRUPE_ppa014924mg | 1 | 158 | + | 158 | Gaps:16 | 45.95 | 309 | 72.54 | 7e-65 | hypothetical protein |
| blastp_kegg | lcl|vvi:100262890 | 1 | 158 | + | 158 | Gaps:7 | 51.75 | 315 | 64.42 | 4e-64 | DNA repair protein XRCC2 homolog |
| blastp_kegg | lcl|pmum:103321358 | 1 | 157 | + | 157 | Gaps:16 | 44.34 | 318 | 72.34 | 5e-64 | DNA repair protein XRCC2 homolog |
| blastp_kegg | lcl|brp:103837530 | 2 | 158 | + | 157 | Gaps:8 | 47.77 | 337 | 60.87 | 5e-63 | DNA repair protein XRCC2 homolog |
| blastp_kegg | lcl|crb:CARUB_v10026593mg | 2 | 158 | + | 157 | Gaps:10 | 43.54 | 379 | 58.79 | 4e-61 | hypothetical protein |
| blastp_kegg | lcl|tcc:TCM_011318 | 3 | 158 | + | 156 | Gaps:5 | 46.76 | 340 | 62.26 | 2e-60 | X-ray repair cross complementing 2 (XRCC2) putative |
| blastp_kegg | lcl|mdm:103403421 | 1 | 158 | + | 158 | Gaps:16 | 44.94 | 316 | 68.31 | 8e-60 | DNA repair protein XRCC2 homolog |
| blastp_kegg | lcl|ath:AT5G64520 | 2 | 157 | + | 156 | Gaps:10 | 55.59 | 295 | 55.49 | 1e-59 | XRCC2 DNA repair protein XRCC2-like protein |
| blastp_kegg | lcl|aly:ARALYDRAFT_686175 | 2 | 158 | + | 157 | Gaps:10 | 42.42 | 389 | 55.76 | 2e-59 | hypothetical protein |
| blastp_kegg | lcl|pxb:103943184 | 1 | 158 | + | 158 | Gaps:22 | 50.29 | 350 | 57.39 | 9e-58 | DNA repair protein XRCC2 homolog |
| blastp_uniprot_sprot | sp|Q682D3|XRCC2_ARATH | 2 | 158 | + | 157 | Gaps:10 | 44.35 | 372 | 55.76 | 5e-60 | DNA repair protein XRCC2 homolog OS Arabidopsis thaliana GN XRCC2 PE 2 SV 2 |
| blastp_uniprot_sprot | sp|O43543|XRCC2_HUMAN | 11 | 156 | + | 146 | Gaps:28 | 43.57 | 280 | 36.07 | 2e-08 | DNA repair protein XRCC2 OS Homo sapiens GN XRCC2 PE 1 SV 1 |
| rpsblast_kog | gnl|CDD|38070 | 3 | 157 | + | 155 | Gaps:12 | 48.81 | 293 | 38.46 | 8e-33 | KOG2859 KOG2859 KOG2859 DNA repair protein member of the recA/RAD51 family [Replication recombination and repair]. |
8 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| PANTHER | 37 | 105 | 69 | PTHR22942:SF5 | none | none | IPR030547 |
| PANTHER | 128 | 162 | 35 | PTHR22942:SF5 | none | none | IPR030547 |
| PANTHER | 37 | 105 | 69 | PTHR22942 | none | none | none |
| PANTHER | 128 | 162 | 35 | PTHR22942 | none | none | none |
| SUPERFAMILY | 131 | 157 | 27 | SSF52540 | none | none | IPR027417 |
| SUPERFAMILY | 38 | 104 | 67 | SSF52540 | none | none | IPR027417 |
| ProSiteProfiles | 2 | 172 | 171 | PS50162 | none | RecA family profile 1. | IPR020588 |
| Gene3D | 39 | 157 | 119 | G3DSA:3.40.50.300 | none | none | IPR027417 |
5 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran_2000_2002_QTL6_Delta.F | Qrob_Chr03 | 3 | s_2HYXJ2_207 | s_1AUAXK_317 | 29.12 | 6,3 | 45,37 | lod | 3.1666 | 0.026 |
| Bourran2_2014_nLBD_3P | Qrob_Chr03 | 3 | s_1ET7H8_604 | s_1BYNB5_834 | 23,73 | 0 | 46,72 | lod | 1,7573 | 3,8 |
| PM_1999_QTL14_peak_Bud_burst_3P | Qrob_Chr03 | 3 | s_2F0SI1_756 | v_6056_735 | 11,78 | 3,78 | 50,78 | lod | 2,5 | 4,5 |
| Bourran2_2014_nFork*_3P | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 34,28 | 7,43 | 41,48 | lod | 2,4044 | 5,5 |
| Bourran2_2014_rEpiBC*_3P | Qrob_Chr03 | 3 | s_1A3B3X_1163 | s_1DKGMO_450 | 23,04 | 4,92 | 41,12 | lod | 2,5668 | 7 |
