4 GO Terms
Identifier | Name | Description |
---|---|---|
GO:0016491 | oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
GO:0055114 | oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
GO:0005507 | copper ion binding | Interacting selectively and non-covalently with copper (Cu) ions. |
GO:0005576 | extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
41 Blast
Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
---|---|---|---|---|---|---|---|---|---|---|---|
blastp_kegg | lcl|pxb:103952077 | 1 | 575 | + | 575 | Gaps:7 | 100.00 | 580 | 71.21 | 0.0 | L-ascorbate oxidase-like |
blastp_kegg | lcl|pmum:103325800 | 1 | 575 | + | 575 | Gaps:7 | 100.00 | 580 | 71.03 | 0.0 | L-ascorbate oxidase-like |
blastp_kegg | lcl|pop:POPTR_0010s17880g | 1 | 570 | + | 570 | Gaps:4 | 99.14 | 579 | 70.91 | 0.0 | POPTRDRAFT_567075 hypothetical protein |
blastp_kegg | lcl|pper:PRUPE_ppa003375mg | 1 | 575 | + | 575 | Gaps:7 | 100.00 | 580 | 70.17 | 0.0 | hypothetical protein |
blastp_kegg | lcl|sot:102582168 | 1 | 575 | + | 575 | Gaps:3 | 100.00 | 578 | 67.65 | 0.0 | L-ascorbate oxidase-like |
blastp_kegg | lcl|sly:778230 | 26 | 575 | + | 550 | none | 95.16 | 578 | 69.82 | 0.0 | AO ascorbate oxidase (EC:1.10.3.3) |
blastp_kegg | lcl|mdm:103427943 | 1 | 575 | + | 575 | Gaps:7 | 100.00 | 580 | 68.79 | 0.0 | L-ascorbate oxidase-like |
blastp_kegg | lcl|mdm:103435397 | 1 | 575 | + | 575 | Gaps:7 | 100.00 | 580 | 68.62 | 0.0 | L-ascorbate oxidase-like |
blastp_kegg | lcl|fve:101304906 | 1 | 575 | + | 575 | Gaps:4 | 100.00 | 579 | 66.84 | 0.0 | L-ascorbate oxidase-like |
blastp_kegg | lcl|pmum:103332491 | 12 | 575 | + | 564 | Gaps:3 | 100.00 | 567 | 68.08 | 0.0 | L-ascorbate oxidase |
blastp_pdb | 1asq_B | 30 | 574 | + | 545 | Gaps:10 | 99.09 | 552 | 51.55 | 0.0 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 1asq_A | 30 | 574 | + | 545 | Gaps:10 | 99.09 | 552 | 51.55 | 0.0 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 1asp_B | 30 | 574 | + | 545 | Gaps:10 | 99.09 | 552 | 51.55 | 0.0 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 1asp_A | 30 | 574 | + | 545 | Gaps:10 | 99.09 | 552 | 51.55 | 0.0 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 1aso_B | 30 | 574 | + | 545 | Gaps:10 | 99.09 | 552 | 51.55 | 0.0 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 1aso_A | 30 | 574 | + | 545 | Gaps:10 | 99.09 | 552 | 51.55 | 0.0 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 1aoz_B | 30 | 574 | + | 545 | Gaps:10 | 99.09 | 552 | 51.55 | 0.0 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 1aoz_A | 30 | 574 | + | 545 | Gaps:10 | 99.09 | 552 | 51.55 | 0.0 | mol:protein length:552 ASCORBATE OXIDASE |
blastp_pdb | 3kw7_B | 46 | 549 | + | 504 | Gaps:82 | 90.44 | 502 | 35.46 | 1e-55 | mol:protein length:502 Laccase B |
blastp_pdb | 3kw7_A | 46 | 549 | + | 504 | Gaps:82 | 90.44 | 502 | 35.46 | 1e-55 | mol:protein length:502 Laccase B |
blastp_uniprot_sprot | sp|P14133|ASO_CUCSA | 9 | 574 | + | 566 | Gaps:11 | 97.27 | 587 | 51.49 | 0.0 | L-ascorbate oxidase OS Cucumis sativus PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q40588|ASO_TOBAC | 27 | 573 | + | 547 | Gaps:9 | 94.81 | 578 | 52.37 | 0.0 | L-ascorbate oxidase OS Nicotiana tabacum GN AAO PE 2 SV 1 |
blastp_uniprot_sprot | sp|P24792|ASO_CUCMA | 1 | 574 | + | 574 | Gaps:11 | 99.65 | 579 | 50.09 | 0.0 | L-ascorbate oxidase OS Cucurbita maxima GN AAO PE 1 SV 2 |
blastp_uniprot_sprot | sp|P37064|ASO_CUCPM | 30 | 574 | + | 545 | Gaps:10 | 99.09 | 552 | 51.55 | 0.0 | L-ascorbate oxidase OS Cucurbita pepo var. melopepo PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q0IQU1|LAC22_ORYSJ | 1 | 549 | + | 549 | Gaps:41 | 96.10 | 564 | 33.03 | 2e-77 | Laccase-22 OS Oryza sativa subsp. japonica GN LAC22 PE 2 SV 2 |
blastp_uniprot_sprot | sp|Q8RYM9|LAC2_ORYSJ | 48 | 549 | + | 502 | Gaps:45 | 88.43 | 562 | 37.02 | 2e-76 | Laccase-2 OS Oryza sativa subsp. japonica GN LAC2 PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q1PDH6|LAC16_ARATH | 8 | 549 | + | 542 | Gaps:48 | 95.41 | 566 | 33.15 | 3e-75 | Laccase-16 OS Arabidopsis thaliana GN LAC16 PE 2 SV 2 |
blastp_uniprot_sprot | sp|Q9FLB5|LAC12_ARATH | 11 | 559 | + | 549 | Gaps:66 | 97.17 | 565 | 33.15 | 7e-75 | Laccase-12 OS Arabidopsis thaliana GN LAC12 PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q8VZA1|LAC11_ARATH | 14 | 549 | + | 536 | Gaps:52 | 95.15 | 557 | 33.77 | 1e-74 | Laccase-11 OS Arabidopsis thaliana GN LAC11 PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q0DHL5|LAC11_ORYSJ | 48 | 549 | + | 502 | Gaps:58 | 94.44 | 540 | 33.92 | 1e-69 | Putative laccase-11 OS Oryza sativa subsp. japonica GN LAC11 PE 5 SV 2 |
19 Domain Motifs
Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
---|---|---|---|---|---|---|---|
Phobius | 22 | 30 | 9 | SIGNAL_PEPTIDE_C_REGION | none | C-terminal region of a signal peptide. | none |
ProSitePatterns | 534 | 545 | 12 | PS00080 | none | Multicopper oxidases signature 2. | IPR002355 |
Gene3D | 44 | 168 | 125 | G3DSA:2.60.40.420 | none | none | IPR008972 |
Phobius | 10 | 21 | 12 | SIGNAL_PEPTIDE_H_REGION | none | Hydrophobic region of a signal peptide. | none |
PANTHER | 12 | 570 | 559 | PTHR11709 | none | none | none |
Phobius | 1 | 9 | 9 | SIGNAL_PEPTIDE_N_REGION | none | N-terminal region of a signal peptide. | none |
Pfam | 165 | 325 | 161 | PF00394 | none | Multicopper oxidase | IPR001117 |
Gene3D | 169 | 356 | 188 | G3DSA:2.60.40.420 | none | none | IPR008972 |
ProSitePatterns | 529 | 549 | 21 | PS00079 | none | Multicopper oxidases signature 1. | IPR002355 |
Pfam | 422 | 550 | 129 | PF07731 | none | Multicopper oxidase | IPR011706 |
SUPERFAMILY | 25 | 176 | 152 | SSF49503 | none | none | IPR008972 |
SUPERFAMILY | 159 | 349 | 191 | SSF49503 | none | none | IPR008972 |
Phobius | 31 | 575 | 545 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
SUPERFAMILY | 366 | 569 | 204 | SSF49503 | none | none | IPR008972 |
Phobius | 1 | 30 | 30 | SIGNAL_PEPTIDE | none | Signal peptide region | none |
Pfam | 39 | 152 | 114 | PF07732 | none | Multicopper oxidase | IPR011707 |
TIGRFAM | 35 | 569 | 535 | TIGR03388 | "KEGG:00053+1.10.3.3" | ascorbase: L-ascorbate oxidase | IPR017760 |
PANTHER | 12 | 570 | 559 | PTHR11709:SF28 | none | none | none |
Gene3D | 364 | 556 | 193 | G3DSA:2.60.40.420 | none | none | IPR008972 |
12 Qtllist
Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
---|---|---|---|---|---|---|---|---|---|---|
Bourran1_2003_QTL2_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 87 | lod | 3,3 | 8,7 |
Bourran1_2004_QTL2_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1AW12F_382 | s_1A77MR_223 | 42 | 6 | 64 | lod | 3,6 | 9,6 |
Bourran2_2003_QTL8_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1ANG6_1446 | v_11270_161 | 40 | 0 | 72 | lod | 4,4 | 9,9 |
Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
Bourran2_2015_nPriLBD_A4 | Qrob_Chr02 | 2 | s_1CP5DI_1183 | s_1A63ZX_1277 | 24,87 | 24,63 | 26,18 | lod | 3.8 | 7 |
Bourran1_2003_QTL1_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1AR8KI_1183 | s_1B0QB1_473 | 22 | 6 | 41 | lod | 4,2 | 11,5 |
Bourran1_2004_QTL3_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 46 | lod | 2,9 | 6,4 |
Bourran2_2015_nEpiBC_A4 | Qrob_Chr07 | 7 | s_1DP9TW_798 | v_8128_173 | 22,61 | 22,14 | 22,73 | lod | 3.1 | 8.5 |
Champenoux_2015_nEpis_A4 | Qrob_Chr02 | 2 | s_1BAGIZ_823 | s_1BN4CB_644 | 23,06 | 23,06 | 23,06 | lod | 4.9 | 11 |
Champenoux_2015_nP_A4 | Qrob_Chr02 | 2 | s_1BN4CB_644 | v_508_128 | 23,76 | 23,06 | 24,51 | lod | 2.8 | 6.2 |
Champenoux_2015_nPriLBD_A4 | Qrob_Chr02 | 2 | s_1CP5DI_1183 | s_1A63ZX_1277 | 25,35 | 24,63 | 26,18 | lod | 4.0 | 8.7 |
Champenoux_2015_nSecLBD_A4 | Qrob_Chr02 | 2 | s_1AN4ZM_1665 | v_8587_238 | 18,52 | 18,89 | 18,27 | lod | 3.2 | 7.4 |