Protein : Qrob_P0096990.2 Q. robur
Protein Identifier  ? Qrob_P0096990.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K02956 - small subunit ribosomal protein S15 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 91  
Kegg Orthology  K02956
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:10251590 1 90 + 90 none 100.00 90 83.33 7e-45 rps15 FvH4_C0112 ribosomal protein S15
blastp_kegg lcl|pmum:18668098 1 90 + 90 none 100.00 90 81.11 4e-44 rps15 CP95_p008 ribosomal protein S15
blastp_kegg lcl|pper:PrpeC_p079 1 90 + 90 none 100.00 90 81.11 4e-44 rps15 ribosomal protein S15
blastp_kegg lcl|rcu:RCOM_ORF00113 1 90 + 90 none 100.00 90 82.22 7e-44 rps15 ribosomal protein S15
blastp_kegg lcl|tcc:ThcaC_p067 1 90 + 90 none 100.00 90 80.00 6e-43 rps15 ribosomal protein S15
blastp_kegg lcl|pop:Poptr_cp086 1 90 + 90 none 100.00 90 80.00 5e-42 rps15 ribosomal protein S15
blastp_kegg lcl|csv:3429309 1 90 + 90 none 100.00 90 81.11 6e-42 rps15 CsCp112 ribosomal protein S15
blastp_kegg lcl|aly:ARALYDRAFT_683149 1 90 + 90 Gaps:2 100.00 88 82.95 2e-41 hypothetical protein
blastp_kegg lcl|pda:8890578 1 90 + 90 none 100.00 90 76.67 6e-41 rps15 PhdaC_p082 30S ribosomal protein S15
blastp_kegg lcl|vvi:4025073 1 90 + 90 Gaps:2 100.00 88 84.09 6e-41 rps15 ViviCp081 ribosomal protein S15
blastp_pdb 3bbn_O 1 90 + 90 none 100.00 90 73.33 3e-37 mol:protein length:90 Ribosomal Protein S15
blastp_pdb 1a32_A 16 85 + 70 none 79.55 88 44.29 5e-14 mol:protein length:88 RIBOSOMAL PROTEIN S15
blastp_pdb 1qd7_H 16 84 + 69 none 81.18 85 43.48 2e-13 mol:protein length:85 S15 RIBOSOMAL PROTEIN
blastp_pdb 3ulw_A 14 86 + 73 none 78.49 93 43.84 9e-13 mol:protein length:93 30S ribosomal protein S15
blastp_pdb 2gyb_O 18 85 + 68 none 79.07 86 41.18 2e-10 mol:protein length:86 30S ribosomal subunit protein S15
blastp_pdb 2gy9_O 18 85 + 68 none 79.07 86 41.18 2e-10 mol:protein length:86 30S ribosomal subunit protein S15
blastp_pdb 3uoq_O 18 85 + 68 none 76.40 89 41.18 2e-10 mol:protein length:89 30S ribosomal protein S15
blastp_pdb 3sfs_O 18 85 + 68 none 76.40 89 41.18 2e-10 mol:protein length:89 30S ribosomal protein S15 1
blastp_pdb 3ora_O 18 85 + 68 none 76.40 89 41.18 2e-10 mol:protein length:89 30S ribosomal protein S15
blastp_pdb 3or9_O 18 85 + 68 none 76.40 89 41.18 2e-10 mol:protein length:89 30S ribosomal protein S15
blastp_uniprot_sprot sp|Q3V4X7|RR15_ACOCL 1 90 + 90 none 100.00 90 86.67 2e-47 30S ribosomal protein S15 chloroplastic OS Acorus calamus GN rps15 PE 3 SV 2
blastp_uniprot_sprot sp|Q0G9G2|RR15_LIRTU 1 90 + 90 none 100.00 90 83.33 1e-45 30S ribosomal protein S15 chloroplastic OS Liriodendron tulipifera GN rps15 PE 3 SV 1
blastp_uniprot_sprot sp|Q49KU1|RR15_EUCGG 1 90 + 90 Gaps:1 100.00 91 84.62 3e-45 30S ribosomal protein S15 chloroplastic OS Eucalyptus globulus subsp. globulus GN rps15 PE 3 SV 1
blastp_uniprot_sprot sp|B1NWK6|RR15_MANES 1 90 + 90 none 100.00 90 81.11 1e-44 30S ribosomal protein S15 chloroplastic OS Manihot esculenta GN rps15 PE 3 SV 1
blastp_uniprot_sprot sp|Q09FY9|RR15_PLAOC 1 90 + 90 none 100.00 90 80.00 2e-44 30S ribosomal protein S15 chloroplastic OS Platanus occidentalis GN rps15 PE 3 SV 1
blastp_uniprot_sprot sp|Q09FQ3|RR15_NANDO 1 90 + 90 none 100.00 90 78.89 3e-44 30S ribosomal protein S15 chloroplastic OS Nandina domestica GN rps15 PE 3 SV 1
blastp_uniprot_sprot sp|Q06GT9|RR15_DRIGR 1 90 + 90 none 100.00 90 80.00 6e-44 30S ribosomal protein S15 chloroplastic OS Drimys granadensis GN rps15 PE 3 SV 1
blastp_uniprot_sprot sp|A4QJY9|RR15_OLIPU 1 90 + 90 Gaps:2 100.00 88 84.09 2e-43 30S ribosomal protein S15 chloroplastic OS Olimarabidopsis pumila GN rps15 PE 3 SV 1
blastp_uniprot_sprot sp|A4QKZ1|RR15_CRUWA 1 90 + 90 Gaps:2 100.00 88 84.09 2e-43 30S ribosomal protein S15 chloroplastic OS Crucihimalaya wallichii GN rps15 PE 3 SV 1
blastp_uniprot_sprot sp|A4GYX3|RR15_POPTR 1 90 + 90 none 100.00 90 80.00 2e-43 30S ribosomal protein S15 chloroplastic OS Populus trichocarpa GN rps15 PE 3 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProDom 11 85 75 PD157043 none RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE none
ProSitePatterns 36 66 31 PS00362 none Ribosomal protein S15 signature. IPR000589
PANTHER 14 86 73 PTHR23321 none none none
Hamap 1 86 86 MF_01343_B none 30S ribosomal protein S15 [rpsO]. IPR005290
TIGRFAM 14 86 73 TIGR00952 none S15_bact: ribosomal protein uS15 IPR005290
Gene3D 13 86 74 G3DSA:1.10.287.10 "Reactome:REACT_71" none IPR009068
Pfam 6 85 80 PF00312 none Ribosomal protein S15 IPR000589
SUPERFAMILY 14 85 72 SSF47060 "Reactome:REACT_71" none IPR009068

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting