Protein : Qrob_P0095390.2 Q. robur
Protein Identifier  ? Qrob_P0095390.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) K03106 - signal recognition particle subunit SRP54 Code Enzyme  EC:3.6.5.4
Gene Prediction Quality  validated Protein length 

Sequence

Length: 145  
Kegg Orthology  K03106
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006614 SRP-dependent cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
GO:0008312 7S RNA binding Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
GO:0048500 signal recognition particle A complex of protein and RNA which facilitates translocation of proteins across membranes.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_010G156800g 1 144 + 144 none 29.09 495 95.83 7e-90 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0901100 1 143 + 143 none 28.77 497 95.10 1e-89 signal recognition particle 54 kD protein putative
blastp_kegg lcl|tcc:TCM_027264 1 143 + 143 none 28.95 494 95.80 2e-89 Signal recognition particle SRP54 subunit protein
blastp_kegg lcl|gmx:100792778 1 143 + 143 none 28.89 495 95.80 3e-89 signal recognition particle 54 kDa protein 2-like
blastp_kegg lcl|pmum:103328099 1 144 + 144 none 29.09 495 93.75 7e-89 signal recognition particle 54 kDa protein 2
blastp_kegg lcl|pper:PRUPE_ppa004695mg 1 144 + 144 none 29.09 495 93.75 7e-89 hypothetical protein
blastp_kegg lcl|gmx:100811698 1 142 + 142 none 28.69 495 96.48 9e-89 signal recognition particle 54 kDa protein 2-like
blastp_kegg lcl|mdm:103437288 1 144 + 144 none 29.09 495 93.75 3e-88 signal recognition particle 54 kDa protein 2
blastp_kegg lcl|vvi:100261219 1 144 + 144 none 29.09 495 91.67 2e-87 signal recognition particle 54 kDa protein 2-like
blastp_kegg lcl|pop:POPTR_0001s26040g 1 144 + 144 none 29.09 495 90.97 2e-87 POPTRDRAFT_172222 Signal recognition particle 54 kDa protein 1
blastp_pdb 2j37_W 1 140 + 140 Gaps:10 29.76 504 43.33 3e-28 mol:protein length:504 SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN (S
blastp_pdb 1mfq_C 1 85 + 85 Gaps:3 68.22 129 46.59 3e-20 mol:protein length:129 signal recognition particle 54kDa protein
blastp_pdb 2go5_W 1 81 + 81 Gaps:3 77.06 109 46.43 6e-19 mol:protein length:109 Signal recognition particle 54 kDa protein (S
blastp_pdb 1ry1_W 1 81 + 81 Gaps:3 77.06 109 46.43 6e-19 mol:protein length:109 Signal recognition particle 54 kDa protein
blastp_pdb 1qb2_B 1 81 + 81 Gaps:3 77.06 109 46.43 6e-19 mol:protein length:109 HUMAN SIGNAL RECOGNITION PARTICLE 54 KD PROTE
blastp_pdb 1qb2_A 1 81 + 81 Gaps:3 77.06 109 46.43 6e-19 mol:protein length:109 HUMAN SIGNAL RECOGNITION PARTICLE 54 KD PROTE
blastp_pdb 3dm5_B 1 99 + 99 Gaps:9 20.32 443 40.00 1e-11 mol:protein length:443 Signal recognition 54 kDa protein
blastp_pdb 3dm5_A 1 99 + 99 Gaps:9 20.32 443 40.00 1e-11 mol:protein length:443 Signal recognition 54 kDa protein
blastp_pdb 3ndb_B 1 82 + 82 Gaps:3 17.40 454 43.04 4e-10 mol:protein length:454 Signal recognition 54 kDa protein
blastp_pdb 2v3c_D 1 72 + 72 Gaps:3 15.97 432 47.83 5e-10 mol:protein length:432 SIGNAL RECOGNITION 54 KDA PROTEIN
blastp_uniprot_sprot sp|P49967|SR543_ARATH 1 144 + 144 none 29.09 495 91.67 8e-88 Signal recognition particle 54 kDa protein 3 OS Arabidopsis thaliana GN SRP-54C PE 2 SV 2
blastp_uniprot_sprot sp|P49972|SR542_SOLLC 1 134 + 134 none 26.85 499 92.54 1e-81 Signal recognition particle 54 kDa protein 2 OS Solanum lycopersicum PE 2 SV 1
blastp_uniprot_sprot sp|P49971|SR541_SOLLC 1 134 + 134 none 27.02 496 88.06 7e-77 Signal recognition particle 54 kDa protein 1 OS Solanum lycopersicum PE 3 SV 1
blastp_uniprot_sprot sp|P49966|SR542_ARATH 1 144 + 144 none 28.97 497 77.78 4e-70 Signal recognition particle 54 kDa protein 2 OS Arabidopsis thaliana GN SRP-54B PE 3 SV 2
blastp_uniprot_sprot sp|P49968|SR541_HORVU 1 135 + 135 Gaps:1 26.96 497 78.36 4e-66 Signal recognition particle 54 kDa protein 1 OS Hordeum vulgare GN SRP54-1 PE 2 SV 1
blastp_uniprot_sprot sp|P49969|SR542_HORVU 1 135 + 135 Gaps:1 26.96 497 78.36 4e-66 Signal recognition particle 54 kDa protein 2 OS Hordeum vulgare GN SRP54-2 PE 2 SV 1
blastp_uniprot_sprot sp|P37106|SR541_ARATH 1 134 + 134 Gaps:15 24.84 479 79.83 1e-53 Signal recognition particle 54 kDa protein 1 OS Arabidopsis thaliana GN SRP-54A PE 2 SV 1
blastp_uniprot_sprot sp|P49970|SR543_HORVU 1 141 + 141 Gaps:5 27.99 493 65.22 4e-51 Signal recognition particle 54 kDa protein 3 OS Hordeum vulgare GN SRP54-3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8MZJ6|SRP54_GEOCY 1 129 + 129 Gaps:12 27.45 499 48.18 7e-28 Signal recognition particle 54 kDa protein OS Geodia cydonium GN SRP54 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R4R6|SRP54_PONAB 1 140 + 140 Gaps:10 29.76 504 43.33 1e-27 Signal recognition particle 54 kDa protein OS Pongo abelii GN SRP54 PE 2 SV 1

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 1 78 78 SSF47446 none none IPR004125
Pfam 1 77 77 PF02978 none Signal peptide binding domain IPR004125
Gene3D 1 82 82 G3DSA:1.10.260.30 none none IPR004125
PANTHER 1 130 130 PTHR11564 none none none

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting