Protein : Qrob_P0089550.2 Q. robur
Protein Identifier  ? Qrob_P0089550.2 Organism . Name  Quercus robur
Score  51.1 Score Type  egn
Protein Description  (M=1) KOG0652//KOG0726//KOG0727//KOG0728//KOG0729//KOG1356//KOG2884//KOG3043 - 26S proteasome regulatory complex ATPase RPT5 [Posttranslational modification protein turnover chaperones]. // 26S proteasome regulatory complex ATPase RPT2 [Posttranslational modification protein turnover chaperones]. // 26S proteasome regulatory complex ATPase RPT3 [Posttranslational modification protein turnover chaperones]. // 26S proteasome regulatory complex ATPase RPT6 [Posttranslational modification protein turnover chaperones]. // 26S proteasome regulatory complex ATPase RPT1 [Posttranslational modification protein turnover chaperones]. // Putative transcription factor 5qNCA contains JmjC domain [Transcription]. // 26S proteasome regulatory complex subunit RPN10/PSMD4 [Posttranslational modification protein turnover chaperones]. // Predicted hydrolase related to dienelactone hydrolase [General function prediction only]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 678  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016787 hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO:0006511 ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO:0008540 proteasome regulatory particle, base subcomplex The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101211476 399 582 + 184 Gaps:8 80.33 239 69.79 1e-87 endo-1 3 1 4-beta-D-glucanase-like
blastp_kegg lcl|pxb:103953471 107 313 + 207 Gaps:7 52.61 403 81.60 2e-87 26S proteasome non-ATPase regulatory subunit 4 homolog
blastp_kegg lcl|mdm:103431971 399 582 + 184 Gaps:8 80.33 239 71.35 2e-87 endo-1 3 1 4-beta-D-glucanase-like
blastp_kegg lcl|cmo:103483753 399 582 + 184 Gaps:8 80.33 239 70.31 3e-87 endo-1 3 1 4-beta-D-glucanase-like
blastp_kegg lcl|mdm:103416805 399 582 + 184 Gaps:8 80.33 239 70.83 1e-86 endo-1 3 1 4-beta-D-glucanase-like
blastp_kegg lcl|gmx:100791370 107 312 + 206 Gaps:12 51.26 398 77.94 3e-86 26S proteasome non-ATPase regulatory subunit 4-like
blastp_kegg lcl|mdm:103431982 399 582 + 184 Gaps:8 80.33 239 70.31 1e-85 endo-1 3 1 4-beta-D-glucanase-like
blastp_kegg lcl|mdm:103416837 399 582 + 184 Gaps:8 78.37 245 70.31 3e-85 endo-1 3 1 4-beta-D-glucanase-like
blastp_kegg lcl|mdm:103403832 399 582 + 184 Gaps:8 78.37 245 69.79 3e-85 endo-1 3 1 4-beta-D-glucanase-like
blastp_kegg lcl|cmo:103483751 399 582 + 184 Gaps:8 80.33 239 70.31 8e-85 endo-1 3 1 4-beta-D-glucanase-like
blastp_pdb 2x5n_A 107 215 + 109 Gaps:7 58.33 192 38.39 2e-16 mol:protein length:192 26S PROTEASOME REGULATORY SUBUNIT RPN10
blastp_pdb 3kw6_A 631 666 + 36 none 46.15 78 72.22 5e-10 mol:protein length:78 26S protease regulatory subunit 8
blastp_pdb 2krk_A 631 666 + 36 none 41.86 86 72.22 5e-10 mol:protein length:86 26S protease regulatory subunit 8
blastp_uniprot_sprot sp|P55034|PSMD4_ARATH 107 291 + 185 Gaps:8 48.96 386 67.72 6e-61 26S proteasome non-ATPase regulatory subunit 4 homolog OS Arabidopsis thaliana GN RPN10 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZT66|E134_MAIZE 416 576 + 161 Gaps:12 54.46 303 49.09 2e-38 Endo-1 3 1 4-beta-D-glucanase OS Zea mays PE 1 SV 1
blastp_uniprot_sprot sp|O94444|RPN10_SCHPO 107 283 + 177 Gaps:22 67.90 243 45.45 4e-33 26S proteasome regulatory subunit rpn10 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpn10 PE 1 SV 1
blastp_uniprot_sprot sp|P55036|PSMD4_HUMAN 111 258 + 148 Gaps:19 37.93 377 48.95 3e-28 26S proteasome non-ATPase regulatory subunit 4 OS Homo sapiens GN PSMD4 PE 1 SV 1
blastp_uniprot_sprot sp|Q58DA0|PSMD4_BOVIN 111 258 + 148 Gaps:19 37.43 382 48.95 3e-28 26S proteasome non-ATPase regulatory subunit 4 OS Bos taurus GN PSMD4 PE 2 SV 1
blastp_uniprot_sprot sp|O35226|PSMD4_MOUSE 111 258 + 148 Gaps:19 38.03 376 48.95 4e-28 26S proteasome non-ATPase regulatory subunit 4 OS Mus musculus GN Psmd4 PE 1 SV 1
blastp_uniprot_sprot sp|P38886|RPN10_YEAST 108 258 + 151 Gaps:8 58.58 268 42.68 8e-27 26S proteasome regulatory subunit RPN10 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPN10 PE 1 SV 3
blastp_uniprot_sprot sp|Q9C5U3|PRS8A_ARATH 575 677 + 103 none 25.30 419 89.62 1e-26 26S protease regulatory subunit 8 homolog A OS Arabidopsis thaliana GN RPT6A PE 1 SV 1
blastp_uniprot_sprot sp|Q94BQ2|PRS8B_ARATH 575 677 + 103 none 25.30 419 88.68 3e-26 26S protease regulatory subunit 8 homolog B OS Arabidopsis thaliana GN RPT6B PE 1 SV 1
blastp_uniprot_sprot sp|Q553E0|PSMD4_DICDI 107 258 + 152 Gaps:25 39.83 349 43.17 4e-26 26S proteasome non-ATPase regulatory subunit 4 OS Dictyostelium discoideum GN psmD4 PE 2 SV 1
rpsblast_cdd gnl|CDD|34749 105 283 + 179 Gaps:22 68.72 243 43.11 6e-33 COG5148 RPN10 26S proteasome regulatory complex subunit RPN10/PSMD4 [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|29225 107 211 + 105 Gaps:6 58.29 187 51.38 1e-30 cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association..
rpsblast_cdd gnl|CDD|31415 575 675 + 101 Gaps:1 26.11 406 53.77 9e-18 COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|30761 431 602 + 172 Gaps:23 81.78 236 20.73 4e-16 COG0412 COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis transport and catabolism].
rpsblast_cdd gnl|CDD|201946 425 574 + 150 Gaps:22 76.28 215 20.12 3e-15 pfam01738 DLH Dienelactone hydrolase family.
rpsblast_cdd gnl|CDD|179699 573 671 + 99 Gaps:1 26.74 389 47.12 3e-14 PRK03992 PRK03992 proteasome-activating nucleotidase Provisional.
rpsblast_cdd gnl|CDD|185575 573 633 + 61 none 13.93 438 52.46 1e-13 PTZ00361 PTZ00361 26 proteosome regulatory subunit 4-like protein Provisional.

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 255 284 30 Coil none none none
Gene3D 631 674 44 G3DSA:1.10.8.60 none none none
ProSiteProfiles 185 399 215 PS51184 none JmjC domain profile. IPR003347
Pfam 344 372 29 PF02373 none JmjC domain, hydroxylase IPR003347
Gene3D 334 373 40 G3DSA:2.60.120.650 none none none
SMART 133 399 267 SM00558 none A domain family that is part of the cupin metalloenzyme superfamily. IPR003347
SUPERFAMILY 105 199 95 SSF53300 none none IPR002035
SUPERFAMILY 420 573 154 SSF53474 none none IPR029058
Gene3D 426 573 148 G3DSA:3.40.50.1820 none none IPR029058
Pfam 421 573 153 PF01738 none Dienelactone hydrolase family IPR002925
PANTHER 107 280 174 PTHR10223 none none IPR027040
SUPERFAMILY 318 380 63 SSF51197 none none none

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting