Protein : Qrob_P0088630.2 Q. robur

Protein Identifier  ? Qrob_P0088630.2 Organism . Name  Quercus robur
Score  97.2 Score Type  egn
Protein Description  (M=3) 3.2.2.27 - Uracil-DNA glycosylase. Code Enzyme  EC:3.2.2.27
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1865  

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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0006284 base-excision repair In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
GO:0051539 4 iron, 4 sulfur cluster binding Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100257983 27 1864 + 1838 Gaps:220 99.07 1942 56.34 0.0 transcriptional activator DEMETER-like
blastp_kegg lcl|tcc:TCM_022433 19 1856 + 1838 Gaps:233 99.22 1922 55.79 0.0 Repressor of gene silencing 1 isoform 1
blastp_kegg lcl|pmum:103339735 16 1864 + 1849 Gaps:264 100.00 1753 57.96 0.0 protein ROS1
blastp_kegg lcl|pxb:103944304 193 1864 + 1672 Gaps:194 93.59 1810 57.50 0.0 protein ROS1-like
blastp_kegg lcl|mdm:103453930 193 1864 + 1672 Gaps:196 93.69 1808 57.32 0.0 protein ROS1-like
blastp_kegg lcl|pxb:103955171 193 1864 + 1672 Gaps:203 93.78 1801 57.31 0.0 protein ROS1-like
blastp_kegg lcl|mdm:103449392 193 1864 + 1672 Gaps:204 93.78 1802 57.57 0.0 protein ROS1
blastp_kegg lcl|cic:CICLE_v10010892mg 221 1863 + 1643 Gaps:198 94.36 1807 58.89 0.0 hypothetical protein
blastp_kegg lcl|fve:101306354 196 1864 + 1669 Gaps:239 94.25 1670 59.28 0.0 protein ROS1-like
blastp_kegg lcl|cit:102612881 21 1829 + 1809 Gaps:239 91.78 1972 56.52 0.0 protein ROS1-like
blastp_uniprot_sprot sp|Q8LK56|DME_ARATH 20 1859 + 1840 Gaps:173 57.27 1987 54.83 0.0 Transcriptional activator DEMETER OS Arabidopsis thaliana GN DME PE 1 SV 2
blastp_uniprot_sprot sp|Q9SJQ6|ROS1_ARATH 576 1855 + 1280 Gaps:120 68.20 1393 60.00 0.0 Protein ROS1 OS Arabidopsis thaliana GN ROS1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SR66|DML2_ARATH 690 1864 + 1175 Gaps:96 61.86 1332 56.67 0.0 DEMETER-like protein 2 OS Arabidopsis thaliana GN DML2 PE 3 SV 2
blastp_uniprot_sprot sp|O49498|DML3_ARATH 864 1851 + 988 Gaps:71 63.22 1044 50.45 4e-157 DEMETER-like protein 3 OS Arabidopsis thaliana GN DML3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9WYK0|END3_THEMA 1372 1538 + 167 Gaps:27 65.73 213 35.00 1e-07 Endonuclease III OS Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN nth PE 3 SV 1
blastp_uniprot_sprot sp|Q58829|Y1434_METJA 1336 1535 + 200 Gaps:24 80.00 220 28.41 2e-06 Putative endonuclease MJ1434 OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN MJ1434 PE 3 SV 1
rpsblast_cdd gnl|CDD|30526 1353 1536 + 184 Gaps:32 76.78 211 33.33 2e-20 COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|201417 1367 1483 + 117 Gaps:10 78.47 144 33.63 1e-15 pfam00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein. This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This includes endonuclease III EC:4.2.99.18 and MutY an A/G-specific adenine glycosylase both have a C terminal 4Fe-4S cluster. The family also includes 8-oxoguanine DNA glycosylases. The methyl-CPG binding protein MBD4 also contains a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other members of the AlkA family.
rpsblast_cdd gnl|CDD|197751 1367 1516 + 150 Gaps:26 83.22 149 34.68 2e-15 smart00478 ENDO3c endonuclease III. includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases.
rpsblast_cdd gnl|CDD|32412 1336 1537 + 202 Gaps:30 80.00 215 28.49 4e-14 COG2231 COG2231 Uncharacterized protein related to Endonuclease III [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|28938 1365 1483 + 119 Gaps:7 70.89 158 36.61 1e-13 cd00056 ENDO3c endonuclease III includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases.
rpsblast_cdd gnl|CDD|130155 1372 1526 + 155 Gaps:27 67.02 191 31.25 2e-08 TIGR01083 nth endonuclease III. This equivalog HMM identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
rpsblast_kog gnl|CDD|37132 1349 1529 + 181 Gaps:42 56.99 286 31.29 4e-07 KOG1921 KOG1921 KOG1921 Endonuclease III [Replication recombination and repair].

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 1437 1540 104 G3DSA:1.10.1670.10 none none IPR023170
PANTHER 1332 1864 533 PTHR10359:SF22 none none none
Gene3D 1350 1436 87 G3DSA:1.10.340.30 "Reactome:REACT_216" none IPR011257
PANTHER 1332 1864 533 PTHR10359 none none none
Pfam 1763 1852 90 PF15628 none RRM in Demeter IPR028925
PANTHER 805 920 116 PTHR10359:SF22 none none none
Pfam 1729 1759 31 PF15629 none Permuted single zf-CXXC unit IPR028924
Pfam 1360 1482 123 PF00730 "Reactome:REACT_216" HhH-GPD superfamily base excision DNA repair protein IPR003265
Coils 1635 1656 22 Coil none none none
SMART 1352 1517 166 SM00478 "Reactome:REACT_216" endonuclease III IPR003265
PANTHER 946 1051 106 PTHR10359 none none none
SUPERFAMILY 943 987 45 SSF48150 "Reactome:REACT_216" none IPR011257
SUPERFAMILY 1365 1540 176 SSF48150 "Reactome:REACT_216" none IPR011257
PANTHER 1206 1311 106 PTHR10359:SF22 none none none
PANTHER 946 1051 106 PTHR10359:SF22 none none none
SMART 1518 1538 21 SM00525 "Reactome:REACT_216" none IPR003651
PANTHER 1206 1311 106 PTHR10359 none none none
PANTHER 805 920 116 PTHR10359 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting