Protein : Qrob_P0086790.2 Q. robur
Protein Identifier  ? Qrob_P0086790.2 Organism . Name  Quercus robur
Score  82.0 Score Type  egn
Protein Description  (M=2) PTHR10315//PTHR10315:SF24 - SEVEN IN ABSENTIA HOMOLOG // SUBFAMILY NOT NAMED Code Enzyme  EC:3.1.3.16
Gene Prediction Quality  validated Protein length 

Sequence

Length: 631  
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0004842 ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
GO:0016567 protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
GO:0007275 multicellular organismal development The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006511 ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_045462 9 630 + 622 Gaps:4 97.03 639 77.74 0.0 RING/U-box and TRAF-like domains
blastp_kegg lcl|pmum:103328702 8 630 + 623 Gaps:5 99.84 621 78.39 0.0 uncharacterized LOC103328702
blastp_kegg lcl|cit:102612380 8 629 + 622 Gaps:8 99.68 620 79.13 0.0 uncharacterized LOC102612380
blastp_kegg lcl|vvi:100263780 18 630 + 613 Gaps:7 98.54 617 78.12 0.0 uncharacterized LOC100263780
blastp_kegg lcl|cic:CICLE_v10011294mg 8 629 + 622 Gaps:5 99.68 623 78.10 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s09080g 6 629 + 624 Gaps:4 99.04 628 74.12 0.0 POPTRDRAFT_555927 hypothetical protein
blastp_kegg lcl|mdm:103429377 8 627 + 620 Gaps:20 98.05 616 77.98 0.0 uncharacterized LOC103429377
blastp_kegg lcl|pper:PRUPE_ppa003531mg 8 630 + 623 Gaps:59 99.82 567 81.63 0.0 hypothetical protein
blastp_kegg lcl|gmx:100782920 19 629 + 611 Gaps:17 99.17 601 71.48 0.0 uncharacterized LOC100782920
blastp_kegg lcl|sot:102585691 8 624 + 617 Gaps:10 98.86 616 69.13 0.0 uncharacterized LOC102585691
blastp_uniprot_sprot sp|Q84K34|SIL10_ARATH 436 620 + 185 Gaps:6 53.01 349 32.97 3e-21 E3 ubiquitin-protein ligase SINA-like 10 OS Arabidopsis thaliana GN At5g37930 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C9M0|SINL4_ARATH 435 624 + 190 Gaps:11 60.49 329 28.14 8e-16 E3 ubiquitin-protein ligase SINA-like 4 OS Arabidopsis thaliana GN At1g66650 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FKD9|SINL6_ARATH 435 560 + 126 Gaps:3 45.91 281 31.01 6e-15 Putative E3 ubiquitin-protein ligase SINA-like 6 OS Arabidopsis thaliana GN At5g37870 PE 3 SV 1
blastp_uniprot_sprot sp|Q9C6H2|SINL3_ARATH 444 624 + 181 Gaps:24 67.00 303 27.59 6e-15 E3 ubiquitin-protein ligase SINA-like 3 OS Arabidopsis thaliana GN At1g66630 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C6H3|SINL2_ARATH 444 619 + 176 Gaps:7 57.83 313 30.39 2e-14 E3 ubiquitin-protein ligase SINA-like 2 OS Arabidopsis thaliana GN At1g66620 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FM14|SIL11_ARATH 426 607 + 182 Gaps:22 58.60 314 32.61 8e-14 E3 ubiquitin-protein ligase SINA-like 11 OS Arabidopsis thaliana GN At5g62800 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FKD7|SINL7_ARATH 438 560 + 123 Gaps:3 44.06 286 30.95 2e-13 E3 ubiquitin-protein ligase SINA-like 7 OS Arabidopsis thaliana GN At5g37890 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FKD6|SINL8_ARATH 431 560 + 130 Gaps:8 50.95 263 29.85 1e-11 E3 ubiquitin-protein ligase SINA-like 8 OS Arabidopsis thaliana GN At5g37900 PE 1 SV 2
blastp_uniprot_sprot sp|Q9C6H4|SINL1_ARATH 455 603 + 149 Gaps:4 41.80 366 30.72 1e-10 E3 ubiquitin-protein ligase SINA-like 1 OS Arabidopsis thaliana GN At1g66610 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XA77|SINL5_ARATH 435 619 + 185 Gaps:14 58.84 328 30.05 3e-09 E3 ubiquitin-protein ligase SINA-like 5 OS Arabidopsis thaliana GN At1g66660 PE 2 SV 2
rpsblast_cdd gnl|CDD|190542 444 607 + 164 Gaps:19 85.35 198 27.81 3e-11 pfam03145 Sina Seven in absentia protein family. The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non- neuronal cell type. The Sina protein contains an N-terminal RING finger domain pfam00097. Through this domain Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination while PHYL down-regulates the activity of TTK88. In turn the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase a process essential for R7 determination. It is thought that thus Sina targets TTK88 for degradation therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 also binds E2 enzymes (UbcH5) and through a series of physical interactions targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53 itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation. Sina proteins therefore physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is described in pfam00097 and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins and is included in this alignment. In addition to the Drosophila protein and mammalian homologues whose similarity was noted previously this family also includes putative homologues from Caenorhabditis elegans Arabidopsis thaliana.
rpsblast_cdd gnl|CDD|28965 43 103 + 61 Gaps:1 90.91 66 35.00 3e-07 cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors TCF-1 -3 -4 and also SRY and LEF-1 which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins HMG1 and HMG2 which bind to bent or distorted DNA such as four-way DNA junctions synthetic DNA cruciforms kinked cisplatin-modified DNA DNA bulges cross-overs in supercoiled DNA and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors UBF and mtTF1 which bind four-way DNA junctions..
rpsblast_cdd gnl|CDD|204506 192 327 + 136 Gaps:14 42.02 357 28.67 5e-07 pfam10536 PMD Plant mobile domain. This domain was identified by Babu and colleagues in a variety of transposases.
rpsblast_cdd gnl|CDD|197700 41 103 + 63 Gaps:1 88.57 70 30.65 7e-07 smart00398 HMG high mobility group.
rpsblast_kog gnl|CDD|38212 435 619 + 185 Gaps:13 66.22 299 25.25 4e-17 KOG3002 KOG3002 KOG3002 Zn finger protein [General function prediction only].

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 18 39 22 Coil none none none
PANTHER 444 619 176 PTHR10315 "UniPathway:UPA00143";signature_desc=SEVEN IN ABSENTIA HOMOLOG none IPR004162
SUPERFAMILY 447 619 173 SSF49599 none none IPR008974
Pfam 444 574 131 PF03145 "UniPathway:UPA00143" Seven in absentia protein family IPR018121
SUPERFAMILY 29 105 77 SSF47095 none none IPR009071
Gene3D 447 499 53 G3DSA:3.90.890.10 none none IPR013323
SMART 41 112 72 SM00398 none high mobility group IPR009071
Pfam 189 326 138 PF10536 none Plant mobile domain IPR019557
ProSiteProfiles 447 504 58 PS51081 "UniPathway:UPA00143" Zinc finger SIAH-type profile. IPR013010
ProSiteProfiles 42 111 70 PS50118 none HMG boxes A and B DNA-binding domains profile. IPR009071
PANTHER 444 619 176 PTHR10315:SF24 none none none
Pfam 43 109 67 PF00505 none HMG (high mobility group) box IPR009071
Gene3D 44 104 61 G3DSA:1.10.30.10 none none IPR009071

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting