| Analysis | rpsblast_cdd | Start | 43 |
| End | 103 | Strand | + |
| Length | 61 | Note | Gaps:1 |
| Hit Coverage | 90.91 | Hit Length | 66 |
| Hit Pident | 35.00 | E Val | 3e-07 |
| Hit Description | cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors TCF-1 -3 -4 and also SRY and LEF-1 which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins HMG1 and HMG2 which bind to bent or distorted DNA such as four-way DNA junctions synthetic DNA cruciforms kinked cisplatin-modified DNA DNA bulges cross-overs in supercoiled DNA and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors UBF and mtTF1 which bind four-way DNA junctions.. | Hit Pcons | 18.33 |
| Name | Qrob_P0086790.2 |
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0086790.2 | Quercus robur | 82.0 | egn | (M=2) PTHR10315//PTHR10315:SF24 - SEVEN IN ABSENTIA HOMOLOG // SUBFAMILY NOT NAMED | EC:3.1.3.16 | validated |
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