Protein : Qrob_P0074380.2 Q. robur
Protein Identifier  ? Qrob_P0074380.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K10871 - RAD51-like protein 3 Code Enzyme  EC:3.6.1.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 396  
Kegg Orthology  K10871
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0008094 DNA-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100257115 1 334 + 334 Gaps:32 92.64 326 74.50 3e-153 DNA repair protein RAD51 homolog 4-like
blastp_kegg lcl|csv:101212497 1 344 + 344 Gaps:34 99.36 314 70.83 2e-151 DNA repair protein RAD51 homolog 4-like
blastp_kegg lcl|tcc:TCM_041916 1 340 + 340 Gaps:26 33.02 951 73.25 2e-149 Tetratricopeptide repeat-like superfamily protein
blastp_kegg lcl|rcu:RCOM_0787740 1 344 + 344 Gaps:33 99.37 315 71.57 3e-149 DNA repair and recombination protein radB putative
blastp_kegg lcl|pper:PRUPE_ppa019062mg 1 334 + 334 Gaps:26 100.00 308 75.00 3e-148 hypothetical protein
blastp_kegg lcl|gmx:100780427 1 335 + 335 Gaps:25 95.38 325 70.32 3e-148 DNA repair protein RAD51 homolog 4-like
blastp_kegg lcl|cam:101510404 1 334 + 334 Gaps:27 95.96 322 70.55 6e-148 DNA repair protein RAD51 homolog 4-like
blastp_kegg lcl|mdm:103447752 1 344 + 344 Gaps:32 100.00 324 70.37 1e-146 DNA repair protein RAD51 homolog 4
blastp_kegg lcl|pmum:103322663 1 344 + 344 Gaps:27 100.00 319 72.73 1e-146 DNA repair protein RAD51 homolog 4
blastp_kegg lcl|cmo:103490575 1 344 + 344 Gaps:53 99.43 349 64.55 7e-146 DNA repair protein RAD51 homolog 4
blastp_pdb 1pzn_G 89 260 + 172 Gaps:23 46.70 349 34.36 1e-09 mol:protein length:349 DNA repair and recombination protein rad51
blastp_pdb 1pzn_F 89 260 + 172 Gaps:23 46.70 349 34.36 1e-09 mol:protein length:349 DNA repair and recombination protein rad51
blastp_pdb 1pzn_E 89 260 + 172 Gaps:23 46.70 349 34.36 1e-09 mol:protein length:349 DNA repair and recombination protein rad51
blastp_pdb 1pzn_D 89 260 + 172 Gaps:23 46.70 349 34.36 1e-09 mol:protein length:349 DNA repair and recombination protein rad51
blastp_pdb 1pzn_C 89 260 + 172 Gaps:23 46.70 349 34.36 1e-09 mol:protein length:349 DNA repair and recombination protein rad51
blastp_pdb 1pzn_B 89 260 + 172 Gaps:23 46.70 349 34.36 1e-09 mol:protein length:349 DNA repair and recombination protein rad51
blastp_pdb 1pzn_A 89 260 + 172 Gaps:23 46.70 349 34.36 1e-09 mol:protein length:349 DNA repair and recombination protein rad51
blastp_pdb 1n0w_A 89 260 + 172 Gaps:22 67.49 243 30.49 6e-09 mol:protein length:243 DNA repair protein RAD51 homolog 1
blastp_pdb 2cvh_B 88 223 + 136 Gaps:20 52.73 220 38.79 1e-07 mol:protein length:220 DNA repair and recombination protein radB
blastp_pdb 2cvh_A 88 223 + 136 Gaps:20 52.73 220 38.79 1e-07 mol:protein length:220 DNA repair and recombination protein radB
blastp_uniprot_sprot sp|Q9LQQ2|RA51D_ARATH 1 334 + 334 Gaps:34 94.41 322 62.83 2e-130 DNA repair protein RAD51 homolog 4 OS Arabidopsis thaliana GN RAD51D PE 2 SV 2
blastp_uniprot_sprot sp|O55230|RA51D_MOUSE 73 344 + 272 Gaps:40 75.99 329 36.00 2e-34 DNA repair protein RAD51 homolog 4 OS Mus musculus GN Rad51d PE 2 SV 1
blastp_uniprot_sprot sp|O75771|RA51D_HUMAN 73 320 + 248 Gaps:32 66.46 328 39.91 2e-29 DNA repair protein RAD51 homolog 4 OS Homo sapiens GN RAD51D PE 1 SV 1
blastp_uniprot_sprot sp|Q2HJ51|RA51D_BOVIN 74 334 + 261 Gaps:36 72.09 326 38.72 3e-27 DNA repair protein RAD51 homolog 4 OS Bos taurus GN RAD51D PE 2 SV 1
blastp_uniprot_sprot sp|Q1ZXF0|RA51D_DICDI 73 320 + 248 Gaps:53 70.90 354 27.49 3e-24 Probable DNA repair protein RAD51 homolog 4 OS Dictyostelium discoideum GN rad51d PE 3 SV 1
blastp_uniprot_sprot sp|O15315|RA51B_HUMAN 56 315 + 260 Gaps:26 68.75 384 27.27 2e-11 DNA repair protein RAD51 homolog 2 OS Homo sapiens GN RAD51B PE 1 SV 2
blastp_uniprot_sprot sp|O35719|RA51B_MOUSE 56 315 + 260 Gaps:28 75.43 350 28.41 3e-11 DNA repair protein RAD51 homolog 2 OS Mus musculus GN Rad51b PE 2 SV 2
blastp_uniprot_sprot sp|Q99133|RAD51_USTMA 82 260 + 179 Gaps:23 50.74 339 30.23 2e-10 DNA repair protein RAD51 OS Ustilago maydis (strain 521 / FGSC 9021) GN RAD51 PE 3 SV 1
blastp_uniprot_sprot sp|Q54PJ7|RA51C_DICDI 73 343 + 271 Gaps:48 66.40 381 28.06 5e-10 DNA repair protein RAD51 homolog 3 OS Dictyostelium discoideum GN rad51c PE 3 SV 1
blastp_uniprot_sprot sp|A3MXX9|RADA_PYRCJ 28 221 + 194 Gaps:28 53.61 332 29.78 2e-09 DNA repair and recombination protein RadA OS Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN radA PE 3 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 12 259 248 PTHR22942:SF8 none none none
Gene3D 87 337 251 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 85 265 181 PS50162 none RecA family profile 1. IPR020588
PANTHER 285 334 50 PTHR22942:SF8 none none none
Pfam 85 260 176 PF08423 none Rad51 IPR013632
Phobius 361 365 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 88 334 247 SSF52540 none none IPR027417
Phobius 338 360 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 337 337 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 12 259 248 PTHR22942 none none none
PANTHER 285 334 50 PTHR22942 none none none
Phobius 366 385 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 386 395 10 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

2 Localization

Analysis Start End Length
TMHMM 367 386 19
TMHMM 338 360 22

0 Qtllist

0 Targeting