Protein : Qrob_P0065840.2 Q. robur
Protein Identifier  ? Qrob_P0065840.2 Organism . Name  Quercus robur
Score  16.3 Score Type  egn
Protein Description  (M=27) 1.3.3.8 - Tetrahydroberberine oxidase. Code Enzyme  EC:1.3.3.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 452  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0050660 flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity Catalysis of the reaction: UDP-N-acetylmuramate + NADP+ = UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine + NADPH + H+.
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0011s16440g 4 448 + 445 Gaps:42 93.06 519 65.63 0.0 FAD-binding domain-containing family protein
blastp_kegg lcl|tcc:TCM_027080 13 446 + 434 Gaps:40 84.19 563 63.92 0.0 FAD-binding Berberine family protein putative
blastp_kegg lcl|vvi:100266314 12 446 + 435 Gaps:40 60.90 780 64.63 0.0 reticuline oxidase-like protein-like
blastp_kegg lcl|gmx:100782292 8 448 + 441 Gaps:40 90.51 527 61.64 0.0 tetrahydrocannabinolic acid synthase-like
blastp_kegg lcl|cic:CICLE_v10018216mg 12 444 + 433 Gaps:37 88.68 530 63.19 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa023336mg 12 446 + 435 Gaps:38 90.23 522 64.33 0.0 hypothetical protein
blastp_kegg lcl|cit:102618094 12 444 + 433 Gaps:37 89.18 527 62.98 0.0 tetrahydrocannabinolic acid synthase-like
blastp_kegg lcl|rcu:RCOM_1335960 13 444 + 432 Gaps:40 89.90 525 62.29 0.0 Reticuline oxidase precursor putative (EC:1.21.3.3)
blastp_kegg lcl|gmx:732593 9 448 + 440 Gaps:37 90.17 529 60.38 0.0 FAD-linked oxidoreductase 2
blastp_kegg lcl|pvu:PHAVU_005G004700g 12 446 + 435 Gaps:40 88.37 533 60.93 0.0 hypothetical protein
blastp_pdb 3fw9_A 4 444 + 441 Gaps:47 96.57 495 42.05 2e-99 mol:protein length:495 Reticuline oxidase
blastp_pdb 3gsy_A 4 444 + 441 Gaps:47 92.10 519 42.05 4e-99 mol:protein length:519 Reticuline oxidase Berberine bridge-forming
blastp_pdb 3d2j_A 4 444 + 441 Gaps:47 88.85 538 42.05 7e-99 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3d2h_A 4 444 + 441 Gaps:47 88.85 538 42.05 7e-99 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3d2d_A 4 444 + 441 Gaps:47 88.85 538 42.05 7e-99 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3fwa_A 4 444 + 441 Gaps:47 96.18 497 41.84 4e-98 mol:protein length:497 Reticuline oxidase
blastp_pdb 3fw8_A 4 444 + 441 Gaps:47 96.57 495 41.84 5e-98 mol:protein length:495 Reticuline oxidase
blastp_pdb 3fw7_A 4 444 + 441 Gaps:47 95.98 498 41.84 6e-98 mol:protein length:498 Reticuline oxidase
blastp_pdb 3rja_A 35 447 + 413 Gaps:76 92.39 473 26.32 5e-29 mol:protein length:473 Carbohydrate oxidase
blastp_pdb 3rj8_A 35 447 + 413 Gaps:76 92.39 473 26.32 5e-29 mol:protein length:473 Carbohydrate oxidase
blastp_uniprot_sprot sp|Q8GTB6|THCAS_CANSA 6 446 + 441 Gaps:62 92.29 545 47.71 2e-143 Tetrahydrocannabinolic acid synthase OS Cannabis sativa PE 1 SV 1
blastp_uniprot_sprot sp|A6P6W1|CASL2_CANSA 13 446 + 434 Gaps:50 88.44 545 48.55 2e-142 Cannabidiolic acid synthase-like 2 OS Cannabis sativa GN CBDAS3 PE 2 SV 1
blastp_uniprot_sprot sp|A6P6W0|CASL1_CANSA 13 446 + 434 Gaps:50 88.44 545 48.34 1e-141 Cannabidiolic acid synthase-like 1 OS Cannabis sativa GN CBDAS2 PE 2 SV 1
blastp_uniprot_sprot sp|Q33DQ2|THCAI_CANSA 13 446 + 434 Gaps:50 88.44 545 48.76 1e-139 Inactive tetrahydrocannabinolic acid synthase OS Cannabis sativa PE 3 SV 1
blastp_uniprot_sprot sp|A6P6V9|CBDAS_CANSA 13 446 + 434 Gaps:49 88.42 544 46.99 3e-136 Cannabidiolic acid synthase OS Cannabis sativa GN CBDAS PE 1 SV 1
blastp_uniprot_sprot sp|Q9SVG4|RETOL_ARATH 6 448 + 443 Gaps:43 84.21 570 44.38 1e-122 Reticuline oxidase-like protein OS Arabidopsis thaliana GN At4g20830 PE 1 SV 2
blastp_uniprot_sprot sp|P30986|RETO_ESCCA 4 444 + 441 Gaps:47 88.85 538 42.05 3e-98 Reticuline oxidase OS Eschscholzia californica GN BBE1 PE 1 SV 1
blastp_uniprot_sprot sp|P93479|RETO_PAPSO 4 444 + 441 Gaps:47 89.35 535 40.38 3e-97 Reticuline oxidase OS Papaver somniferum GN BBE1 PE 3 SV 1
blastp_uniprot_sprot sp|O06997|YVDP_BACSU 35 444 + 410 Gaps:72 92.17 447 31.55 1e-19 Uncharacterized FAD-linked oxidoreductase YvdP OS Bacillus subtilis (strain 168) GN yvdP PE 1 SV 1
blastp_uniprot_sprot sp|P08159|HDNO_ARTOX 27 443 + 417 Gaps:79 92.58 458 27.12 1e-14 6-hydroxy-D-nicotine oxidase OS Arthrobacter oxydans PE 1 SV 2

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 35 68 34 PS00862 none Oxygen oxidoreductases covalent FAD-binding site. IPR006093
Gene3D 27 91 65 G3DSA:3.30.43.10 none none IPR016167
Pfam 387 444 58 PF08031 none Berberine and berberine like IPR012951
PANTHER 12 450 439 PTHR32448 none none none
SUPERFAMILY 20 206 187 SSF56176 none none IPR016166
Gene3D 92 206 115 G3DSA:3.30.465.10 none none IPR016169
ProSiteProfiles 31 205 175 PS51387 none PCMH-type FAD-binding domain profile. IPR016166
Pfam 35 171 137 PF01565 "KEGG:00520+1.3.1.98","KEGG:00550+1.3.1.98","MetaCyc:PWY-6386","MetaCyc:PWY-6387","UniPathway:UPA00219" FAD binding domain IPR006094

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 23   Secretory pathway 5 0.307 0.277 NON-PLANT 23