Protein : Qrob_P0052590.2 Q. robur
Protein Identifier  ? Qrob_P0052590.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) PTHR10769 - 40S RIBOSOMAL PROTEIN S28 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 78  
Kegg Orthology  K02979
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10013805mg 6 58 + 53 none 80.30 66 83.02 1e-21 hypothetical protein
blastp_kegg lcl|cit:102626904 6 58 + 53 none 80.30 66 83.02 1e-21 40S ribosomal protein S28-like
blastp_kegg lcl|cam:101490631 1 58 + 58 none 89.23 65 70.69 1e-20 40S ribosomal protein S28-like
blastp_kegg lcl|pvu:PHAVU_001G199400g 1 58 + 58 none 89.23 65 67.24 8e-20 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_007G264100g 1 58 + 58 none 89.23 65 67.24 8e-20 hypothetical protein
blastp_kegg lcl|gmx:100790570 1 58 + 58 none 89.23 65 67.24 1e-19 40S ribosomal protein S28-like
blastp_kegg lcl|gmx:100788626 1 58 + 58 none 89.23 65 67.24 1e-19 40S ribosomal protein S28-like
blastp_kegg lcl|gmx:100306357 1 58 + 58 none 89.23 65 67.24 1e-19 uncharacterized LOC100306357
blastp_kegg lcl|gmx:100811085 1 58 + 58 none 89.23 65 67.24 1e-19 40S ribosomal protein S28-like
blastp_kegg lcl|gmx:100818200 1 58 + 58 none 89.23 65 67.24 1e-19 40S ribosomal protein S28-like
blastp_pdb 3iz6_Y 1 58 + 58 none 89.23 65 67.24 4e-21 mol:protein length:65 40S ribosomal protein S28 (S28e)
blastp_pdb 3u5g_c 5 58 + 54 none 80.60 67 64.81 1e-17 mol:protein length:67 40S ribosomal protein S28-A
blastp_pdb 3u5c_c 5 58 + 54 none 80.60 67 64.81 1e-17 mol:protein length:67 40S ribosomal protein S28-A
blastp_pdb 3o30_R 5 58 + 54 none 80.60 67 64.81 1e-17 mol:protein length:67 40S ribosomal protein S28-A
blastp_pdb 3o2z_R 5 58 + 54 none 80.60 67 64.81 1e-17 mol:protein length:67 40S ribosomal protein S28-A
blastp_pdb 3izb_Y 5 58 + 54 none 80.60 67 64.81 1e-17 mol:protein length:67 40S ribosomal protein rpS28 (S28e)
blastp_pdb 1ny4_A 1 58 + 58 Gaps:3 74.39 82 55.74 2e-11 mol:protein length:82 30S ribosomal protein S28E
blastp_pdb 1ne3_A 4 59 + 56 Gaps:6 91.18 68 46.77 5e-09 mol:protein length:68 30S ribosomal protein S28E
blastp_pdb 2xzn_1 4 56 + 53 Gaps:2 80.88 68 47.27 7e-09 mol:protein length:68 RIBOSOMAL PROTEIN S28E CONTAINING PROTEIN
blastp_pdb 2xzm_1 4 56 + 53 Gaps:2 80.88 68 47.27 7e-09 mol:protein length:68 RIBOSOMAL PROTEIN S28E CONTAINING PROTEIN
blastp_uniprot_sprot sp|Q10421|RS28_SCHPO 5 58 + 54 none 79.41 68 70.37 4e-19 40S ribosomal protein S28 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rps28a PE 3 SV 1
blastp_uniprot_sprot sp|P46302|RS28_MAIZE 1 58 + 58 none 89.23 65 65.52 5e-19 40S ribosomal protein S28 OS Zea mays GN RPS28 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SR73|RS281_ARATH 1 58 + 58 Gaps:1 89.06 64 68.42 7e-19 40S ribosomal protein S28-1 OS Arabidopsis thaliana GN RPS28A PE 3 SV 1
blastp_uniprot_sprot sp|Q90YP3|RS28_ICTPU 5 58 + 54 none 78.26 69 66.67 1e-18 40S ribosomal protein S28 OS Ictalurus punctatus GN rps28 PE 3 SV 1
blastp_uniprot_sprot sp|Q6PBK3|RS28_DANRE 5 58 + 54 none 78.26 69 66.67 1e-18 40S ribosomal protein S28 OS Danio rerio GN rps28 PE 3 SV 1
blastp_uniprot_sprot sp|P34789|RS282_ARATH 1 58 + 58 Gaps:1 89.06 64 66.67 2e-18 40S ribosomal protein S28-2 OS Arabidopsis thaliana GN RPS28C PE 3 SV 1
blastp_uniprot_sprot sp|P62859|RS28_RAT 5 58 + 54 none 78.26 69 64.81 3e-18 40S ribosomal protein S28 OS Rattus norvegicus GN Rps28 PE 1 SV 1
blastp_uniprot_sprot sp|Q6QAT1|RS28_PIG 5 58 + 54 none 78.26 69 64.81 3e-18 40S ribosomal protein S28 OS Sus scrofa GN RPS28 PE 3 SV 2
blastp_uniprot_sprot sp|P62858|RS28_MOUSE 5 58 + 54 none 78.26 69 64.81 3e-18 40S ribosomal protein S28 OS Mus musculus GN Rps28 PE 2 SV 1
blastp_uniprot_sprot sp|P62857|RS28_HUMAN 5 58 + 54 none 78.26 69 64.81 3e-18 40S ribosomal protein S28 OS Homo sapiens GN RPS28 PE 1 SV 1

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 4 57 54 G3DSA:2.40.50.140 none none IPR012340
ProDom 1 46 46 PD005541 none RIBOSOMAL RIBONUCLEOPROTEIN 40S S28 S28E 30S ACETYLATION S33 S33 CG15527 IPR000289
SUPERFAMILY 4 58 55 SSF50249 none none IPR012340
Pfam 4 57 54 PF01200 none Ribosomal protein S28e IPR000289
PANTHER 5 56 52 PTHR10769 none none IPR000289

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting