Protein : Qrob_P0052410.2 Q. robur
Protein Identifier  ? Qrob_P0052410.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K16054 - methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 343  
Kegg Orthology  K16054
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0000287 magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
GO:0019509 L-methionine biosynthetic process from methylthioadenosine The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine.
GO:0043874 acireductone synthase activity Catalysis of the reactions: 5-(methylthio)-2,3-dioxopentyl phosphate + H2O = 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + phosphate; (1a) 5-(methylthio)-2,3-dioxopentyl phosphate = 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate; (1b) 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate + H2O = 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + phosphate.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100247253 36 340 + 305 none 57.44 531 79.67 0.0 probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2-like
blastp_kegg lcl|tcc:TCM_046722 32 340 + 309 none 58.08 532 76.05 5e-171 Bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2 putative
blastp_kegg lcl|tcc:TCM_031540 36 340 + 305 none 57.87 527 66.23 1e-146 Bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 putative
blastp_kegg lcl|pda:103696410 36 340 + 305 none 69.48 439 65.25 2e-146 probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1
blastp_kegg lcl|vvi:100257258 36 340 + 305 Gaps:6 54.96 544 68.56 4e-146 probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1-like
blastp_kegg lcl|pper:PRUPE_ppa004202mg 36 340 + 305 none 58.32 523 65.90 3e-145 hypothetical protein
blastp_kegg lcl|mdm:103422882 36 340 + 305 Gaps:1 58.73 521 66.67 9e-145 probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1
blastp_kegg lcl|mdm:103448693 36 340 + 305 Gaps:1 56.25 544 66.01 4e-143 probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1
blastp_kegg lcl|pop:POPTR_0001s40980g 35 340 + 306 Gaps:12 56.76 518 67.01 6e-142 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10007808mg 36 340 + 305 none 51.61 591 66.56 3e-141 hypothetical protein
blastp_pdb 1zs9_A 100 338 + 239 Gaps:13 91.19 261 43.70 4e-54 mol:protein length:261 E-1 ENZYME
blastp_pdb 1yns_A 100 338 + 239 Gaps:13 91.19 261 43.70 4e-54 mol:protein length:261 E-1 enzyme
blastp_pdb 2g80_D 102 337 + 236 Gaps:40 85.38 253 37.50 2e-26 mol:protein length:253 Protein UTR4
blastp_pdb 2g80_C 102 337 + 236 Gaps:40 85.38 253 37.50 2e-26 mol:protein length:253 Protein UTR4
blastp_pdb 2g80_B 102 337 + 236 Gaps:40 85.38 253 37.50 2e-26 mol:protein length:253 Protein UTR4
blastp_pdb 2g80_A 102 337 + 236 Gaps:40 85.38 253 37.50 2e-26 mol:protein length:253 Protein UTR4
blastp_uniprot_sprot sp|E0CTF3|MTBC2_VITVI 36 340 + 305 none 57.44 531 79.67 0.0 Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2 OS Vitis vinifera GN VIT_12s0028g03470 PE 2 SV 2
blastp_uniprot_sprot sp|E0CSI1|MTBC1_VITVI 36 340 + 305 Gaps:6 57.83 517 68.56 7e-148 Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 OS Vitis vinifera GN VIT_19s0014g02480 PE 3 SV 2
blastp_uniprot_sprot sp|B9N1F9|MTBC_POPTR 35 340 + 306 Gaps:12 56.76 518 67.01 2e-143 Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 OS Populus trichocarpa GN POPTR_0001s40980g PE 3 SV 2
blastp_uniprot_sprot sp|B9SQI7|MTBC_RICCO 36 340 + 305 none 57.87 527 63.61 6e-138 Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 OS Ricinus communis GN RCOM_0591060 PE 3 SV 1
blastp_uniprot_sprot sp|Q2R483|MTBC_ORYSJ 36 340 + 305 Gaps:7 57.53 518 64.43 1e-135 Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 OS Oryza sativa subsp. japonica GN Os11g0484000 PE 2 SV 1
blastp_uniprot_sprot sp|B8BKI7|MTBC_ORYSI 36 340 + 305 Gaps:7 57.53 518 64.43 1e-135 Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 OS Oryza sativa subsp. indica GN OsI_36120 PE 2 SV 1
blastp_uniprot_sprot sp|C6JS30|MTBC_SORBI 36 340 + 305 Gaps:8 57.45 517 61.62 1e-129 Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 OS Sorghum bicolor GN SORBIDRAFT_0019s002010 PE 3 SV 1
blastp_uniprot_sprot sp|Q9FN41|MTBC_ARATH 35 340 + 306 Gaps:13 57.79 507 63.14 4e-128 Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 OS Arabidopsis thaliana GN At5g53850 PE 2 SV 1
blastp_uniprot_sprot sp|B4G0F3|MTBC_MAIZE 36 340 + 305 Gaps:8 57.45 517 62.63 8e-128 Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 OS Zea mays PE 2 SV 1
blastp_uniprot_sprot sp|A9RBS1|MTBC_PHYPA 32 340 + 309 Gaps:15 58.22 505 55.10 3e-106 Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 OS Physcomitrella patens subsp. patens GN PHYPADRAFT_111231 PE 3 SV 1
rpsblast_cdd gnl|CDD|33954 101 337 + 237 Gaps:22 94.76 229 41.94 5e-48 COG4229 COG4229 Predicted enolase-phosphatase [Energy production and conversion].
rpsblast_cdd gnl|CDD|162490 101 337 + 237 Gaps:27 97.27 220 40.65 2e-46 TIGR01691 enolase-ppase 2 3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes including methylation reactions. Use of AdoMet for spermidine biosynthesis which leads to polyamine biosynthesis leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species this single protein is replaced by separate enzymes with enolase and phosphatase activities.
rpsblast_cdd gnl|CDD|205597 200 316 + 117 Gaps:3 65.91 176 29.31 5e-12 pfam13419 HAD_2 Haloacid dehalogenase-like hydrolase.
rpsblast_cdd gnl|CDD|211670 101 311 + 211 Gaps:53 99.37 159 27.85 1e-11 TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain" or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions.The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single HMM is impossible resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily the third has three variant forms: (1) hhhhsDxxx(x)(D/E) (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual HMMs were made based on seeds exhibiting only one of the variants each. Variant 1 (this model) is found in the enzymes phosphoglycolate phosphatase (TIGR01449) and enolase-phosphatase. These three variant models (see also TIGR01493 and TIGR01509) were created withthe knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly relatedHAD subfamilies caused by an overly broad single model.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 100 330 231 G3DSA:3.40.50.1000 none none IPR023214
PANTHER 86 340 255 PTHR20371 none none none
SUPERFAMILY 100 340 241 SSF56784 none none IPR023214
TIGRFAM 100 337 238 TIGR01691 "KEGG:00270+3.1.3.77","UniPathway:UPA00904","UniPathway:UPA00904" enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase IPR023943
Pfam 101 315 215 PF13419 none Haloacid dehalogenase-like hydrolase IPR023214

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting