Protein : Qrob_P0050330.2 Q. robur
Protein Identifier  ? Qrob_P0050330.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) PTHR23273//PTHR23273:SF0 - REPLICATION FACTOR A 1, RFA1 // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 919  
Kegg Orthology  K07466
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO:0006310 DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100263039 1 918 + 918 Gaps:68 100.00 882 69.27 0.0 replication protein A 70 kDa DNA-binding subunit-like
blastp_kegg lcl|csv:101211358 5 903 + 899 Gaps:61 98.72 861 67.88 0.0 replication protein A 70 kDa DNA-binding subunit-like
blastp_kegg lcl|cmo:103490723 5 903 + 899 Gaps:61 98.72 861 68.00 0.0 replication protein A 70 kDa DNA-binding subunit A
blastp_kegg lcl|pmum:103336936 1 918 + 918 Gaps:70 100.00 860 66.63 0.0 replication protein A 70 kDa DNA-binding subunit A
blastp_kegg lcl|pxb:103955565 1 918 + 918 Gaps:55 100.00 875 65.03 0.0 replication protein A 70 kDa DNA-binding subunit E
blastp_kegg lcl|pop:POPTR_0003s10170g 3 918 + 916 Gaps:72 100.00 854 64.87 0.0 POPTRDRAFT_646356 hypothetical protein
blastp_kegg lcl|cam:101512477 1 918 + 918 Gaps:115 100.00 917 61.72 0.0 replication protein A 70 kDa DNA-binding subunit-like
blastp_kegg lcl|mdm:103436779 1 918 + 918 Gaps:55 100.00 875 64.80 0.0 replication protein A 70 kDa DNA-binding subunit E-like
blastp_kegg lcl|rcu:RCOM_0866490 3 912 + 910 Gaps:45 97.78 901 62.66 0.0 replication factor A 1 rfa1 putative
blastp_kegg lcl|tcc:TCM_016675 1 918 + 918 Gaps:99 100.00 911 61.47 0.0 Replication factor A 1 rfa1 putative
blastp_pdb 1fgu_B 304 558 + 255 Gaps:11 97.62 252 45.93 3e-63 mol:protein length:252 REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBU
blastp_pdb 1fgu_A 304 558 + 255 Gaps:11 97.62 252 45.93 3e-63 mol:protein length:252 REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBU
blastp_pdb 1jmc_A 304 552 + 249 Gaps:11 97.56 246 45.42 3e-61 mol:protein length:246 PROTEIN (REPLICATION PROTEIN A (RPA))
blastp_pdb 1l1o_F 570 740 + 171 Gaps:6 91.16 181 38.18 1e-31 mol:protein length:181 Replication protein A 70 kDa DNA-binding subu
blastp_pdb 1l1o_C 570 740 + 171 Gaps:6 91.16 181 38.18 1e-31 mol:protein length:181 Replication protein A 70 kDa DNA-binding subu
blastp_pdb 1ynx_A 305 416 + 112 Gaps:1 97.37 114 44.14 3e-24 mol:protein length:114 Replication factor-A protein 1
blastp_pdb 1ewi_A 1 111 + 111 Gaps:15 89.47 114 34.31 4e-07 mol:protein length:114 REPLICATION PROTEIN A
blastp_pdb 2b3g_A 1 111 + 111 Gaps:15 82.93 123 34.31 9e-07 mol:protein length:123 Replication protein A 70 kDa DNA-binding subu
blastp_pdb 2b29_A 1 111 + 111 Gaps:15 82.93 123 34.31 9e-07 mol:protein length:123 Replication protein A 70 kDa DNA-binding subu
blastp_uniprot_sprot sp|Q9FHJ6|RFA1C_ARATH 1 858 + 858 Gaps:117 98.59 853 55.89 0.0 Replication protein A 70 kDa DNA-binding subunit C OS Arabidopsis thaliana GN RPA1C PE 3 SV 1
blastp_uniprot_sprot sp|F4JSG3|RFA1E_ARATH 1 869 + 869 Gaps:108 98.85 784 56.77 0.0 Replication protein A 70 kDa DNA-binding subunit E OS Arabidopsis thaliana GN RPA1E PE 2 SV 1
blastp_uniprot_sprot sp|Q9SKI4|RFA1A_ARATH 1 743 + 743 Gaps:111 99.69 640 57.52 0.0 Replication protein A 70 kDa DNA-binding subunit A OS Arabidopsis thaliana GN RPA1A PE 1 SV 1
blastp_uniprot_sprot sp|Q65XV7|RFA1C_ORYSJ 1 892 + 892 Gaps:109 92.43 951 45.05 0.0 Replication protein A 70 kDa DNA-binding subunit C OS Oryza sativa subsp. japonica GN RPA1C PE 1 SV 1
blastp_uniprot_sprot sp|Q6YZ49|RFA1A_ORYSJ 20 748 + 729 Gaps:108 97.41 656 54.62 0.0 Replication protein A 70 kDa DNA-binding subunit A OS Oryza sativa subsp. japonica GN RPA1A PE 1 SV 1
blastp_uniprot_sprot sp|Q6NY74|RFA1_DANRE 238 748 + 511 Gaps:23 83.19 601 38.00 1e-102 Replication protein A 70 kDa DNA-binding subunit OS Danio rerio GN rpa1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8VEE4|RFA1_MOUSE 1 745 + 745 Gaps:142 99.68 623 38.16 2e-99 Replication protein A 70 kDa DNA-binding subunit OS Mus musculus GN Rpa1 PE 2 SV 1
blastp_uniprot_sprot sp|P27694|RFA1_HUMAN 1 740 + 740 Gaps:80 97.73 616 39.37 3e-99 Replication protein A 70 kDa DNA-binding subunit OS Homo sapiens GN RPA1 PE 1 SV 2
blastp_uniprot_sprot sp|Q5R7Q4|RFA1_PONAB 1 740 + 740 Gaps:82 97.73 616 39.37 8e-98 Replication protein A 70 kDa DNA-binding subunit OS Pongo abelii GN RPA1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5FW17|RFA1_XENTR 304 748 + 445 Gaps:19 70.94 609 41.20 2e-96 Replication protein A 70 kDa DNA-binding subunit OS Xenopus tropicalis GN rpa1 PE 2 SV 1
rpsblast_cdd gnl|CDD|161961 5 745 + 741 Gaps:78 99.51 608 43.31 1e-166 TIGR00617 rpa1 replication factor-a protein 1 (rpa1). All proteins in this family for which functions are known are part of a multiprotein complex made up of homologs of RPA1 RPA2 and RPA3 that bind ssDNA and function in the recognition of DNA damage for nucleotide excision repairThis family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford University).

27 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 133 209 77 PTHR23273 none none none
ProSiteProfiles 874 888 15 PS50158 none Zinc finger CCHC-type profile. IPR001878
Pfam 873 888 16 PF00098 none Zinc knuckle IPR001878
Gene3D 305 409 105 G3DSA:2.40.50.140 none none IPR012340
PANTHER 286 758 473 PTHR23273:SF0 none none none
PANTHER 1 98 98 PTHR23273:SF0 none none none
SUPERFAMILY 857 892 36 SSF57756 none none IPR001878
Pfam 588 739 152 PF08646 none Replication factor-A C terminal domain IPR013955
Pfam 318 390 73 PF01336 none OB-fold nucleic acid binding domain IPR004365
PANTHER 133 209 77 PTHR23273:SF0 none none none
Gene3D 136 160 25 G3DSA:2.40.50.140 none none IPR012340
Gene3D 1 100 100 G3DSA:2.40.50.140 none none IPR012340
Gene3D 597 746 150 G3DSA:2.40.50.140 none none IPR012340
Pfam 5 103 99 PF04057 none Replication factor-A protein 1, N-terminal domain IPR007199
SUPERFAMILY 423 552 130 SSF50249 none none IPR012340
Gene3D 827 888 62 G3DSA:4.10.60.10 none none IPR001878
Gene3D 421 551 131 G3DSA:2.40.50.140 none none IPR012340
SUPERFAMILY 820 889 70 SSF57756 none none IPR001878
TIGRFAM 274 745 472 TIGR00617 none rpa1: replication factor-a protein 1 (rpa1) IPR004591
SUPERFAMILY 569 746 178 SSF50249 none none IPR012340
SUPERFAMILY 1 104 104 SSF50249 none none IPR012340
SUPERFAMILY 304 418 115 SSF50249 none none IPR012340
PANTHER 1 98 98 PTHR23273 none none none
PANTHER 286 758 473 PTHR23273 none none none
SMART 828 844 17 SM00343 none zinc finger IPR001878
SMART 873 889 17 SM00343 none zinc finger IPR001878
ProSiteProfiles 829 844 16 PS50158 none Zinc finger CCHC-type profile. IPR001878

0 Localization

0 Qtllist

0 Targeting