Protein : Qrob_P0048880.2 Q. robur
Protein Identifier  ? Qrob_P0048880.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 3.1.4.57 - Phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase. Code Enzyme  EC:3.1.4.57
Gene Prediction Quality  validated Protein length 

Sequence

Length: 469  
Kegg Orthology  K07053
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO:0003887 DNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103335920 1 468 + 468 Gaps:19 100.00 449 79.06 0.0 uncharacterized LOC103335920
blastp_kegg lcl|pper:PRUPE_ppa005657mg 1 468 + 468 Gaps:19 100.00 449 78.40 0.0 hypothetical protein
blastp_kegg lcl|cmo:103495435 42 458 + 417 Gaps:9 92.10 443 80.15 0.0 uncharacterized LOC103495435
blastp_kegg lcl|cam:101491897 38 465 + 428 Gaps:10 92.92 452 75.24 0.0 protein TrpH-like
blastp_kegg lcl|fve:101309584 42 467 + 426 Gaps:14 92.58 445 79.37 0.0 protein TrpH-like
blastp_kegg lcl|gmx:100782147 35 468 + 434 Gaps:7 93.23 458 77.75 0.0 uncharacterized LOC100782147
blastp_kegg lcl|tcc:TCM_007504 42 468 + 427 Gaps:9 84.27 496 78.71 0.0 Polymerase/histidinol phosphatase-like
blastp_kegg lcl|csv:101224835 42 458 + 417 Gaps:9 92.10 443 79.41 0.0 protein TrpH-like
blastp_kegg lcl|csv:101218042 42 458 + 417 Gaps:9 92.10 443 79.41 0.0 protein TrpH-like
blastp_kegg lcl|pvu:PHAVU_002G207800g 35 468 + 434 Gaps:5 94.91 452 77.16 0.0 hypothetical protein
blastp_pdb 3o0f_A 101 353 + 253 Gaps:27 83.72 301 35.32 5e-29 mol:protein length:301 putative metal-dependent phosphoesterase
blastp_pdb 3e0f_A 101 353 + 253 Gaps:27 83.72 301 35.32 5e-29 mol:protein length:301 Putative Metal-dependent Phosphoesterase
blastp_pdb 2yb4_A 101 381 + 281 Gaps:25 92.47 292 34.44 1e-26 mol:protein length:292 AMIDOHYDROLASE
blastp_pdb 2yb1_A 101 381 + 281 Gaps:25 92.47 292 34.44 1e-26 mol:protein length:292 AMIDOHYDROLASE
blastp_pdb 3f2d_A 96 165 + 70 Gaps:3 6.82 1041 42.25 7e-06 mol:protein length:1041 GEOBACILLUS KAUSTOPHILUS DNA POLC
blastp_pdb 3f2c_A 96 165 + 70 Gaps:3 6.82 1041 42.25 7e-06 mol:protein length:1041 GEOBACILLUS KAUSTOPHILUS DNA POLC
blastp_pdb 3f2b_A 96 165 + 70 Gaps:3 6.82 1041 42.25 7e-06 mol:protein length:1041 DNA-directed DNA polymerase III alpha chain
blastp_uniprot_sprot sp|P44176|TRPH_HAEIN 101 350 + 250 Gaps:27 89.42 274 38.78 2e-31 Protein TrpH OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN trpH PE 3 SV 1
blastp_uniprot_sprot sp|O54453|TRPH_SALTY 99 350 + 252 Gaps:20 85.32 293 37.20 1e-30 Protein TrpH OS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN trpH PE 3 SV 3
blastp_uniprot_sprot sp|P77766|TRPH_ECOLI 99 350 + 252 Gaps:22 85.32 293 37.60 5e-28 Protein TrpH OS Escherichia coli (strain K12) GN trpH PE 3 SV 1
blastp_uniprot_sprot sp|Q895K2|DPO3_CLOTE 96 161 + 66 Gaps:2 4.77 1427 44.12 1e-06 DNA polymerase III PolC-type OS Clostridium tetani (strain Massachusetts / E88) GN polC PE 3 SV 1
blastp_uniprot_sprot sp|Q8RA32|DPO3_THETN 89 161 + 73 Gaps:3 5.28 1401 39.19 5e-06 DNA polymerase III PolC-type OS Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN polC PE 3 SV 1
rpsblast_cdd gnl|CDD|30958 99 359 + 261 Gaps:16 98.84 258 36.08 9e-38 COG0613 COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].
rpsblast_cdd gnl|CDD|197753 102 165 + 64 Gaps:2 98.51 67 45.45 4e-16 smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain incl. family of hypothetical proteins.
rpsblast_cdd gnl|CDD|202407 102 179 + 78 Gaps:4 47.13 174 39.02 1e-14 pfam02811 PHP PHP domain. The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain.
rpsblast_cdd gnl|CDD|179031 96 165 + 70 Gaps:3 4.94 1437 43.66 5e-13 PRK00448 polC DNA polymerase III PolC Validated.
rpsblast_cdd gnl|CDD|30932 97 183 + 87 Gaps:4 7.64 1139 36.78 9e-12 COG0587 DnaE DNA polymerase III alpha subunit [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|162340 97 176 + 80 Gaps:10 7.25 1213 38.64 4e-10 TIGR01405 polC_Gram_pos DNA polymerase III alpha chain Gram-positive type. This model describes a polypeptide chain of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence poorly alignable and not included n this model.
rpsblast_cdd gnl|CDD|32359 97 165 + 69 Gaps:3 4.85 1444 42.86 5e-10 COG2176 PolC DNA polymerase III alpha subunit (gram-positive type) [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|180191 103 183 + 81 Gaps:7 7.46 1046 38.46 9e-10 PRK05672 dnaE2 error-prone DNA polymerase Validated.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 95 213 119 PTHR30007 none none none
Pfam 102 310 209 PF02811 none PHP domain IPR004013
SMART 101 166 66 SM00481 none DNA polymerase alpha chain like domain IPR003141
PANTHER 95 213 119 PTHR30007:SF4 none none none
Gene3D 99 190 92 G3DSA:3.20.20.140 none none none
Gene3D 264 352 89 G3DSA:3.20.20.140 none none none
SUPERFAMILY 272 353 82 SSF89550 none none IPR016195
SUPERFAMILY 99 186 88 SSF89550 none none IPR016195
PANTHER 247 388 142 PTHR30007 none none none
PANTHER 247 388 142 PTHR30007:SF4 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2

0 Targeting