Protein : Qrob_P0042940.2 Q. robur
Protein Identifier  ? Qrob_P0042940.2 Organism . Name  Quercus robur
Score  86.1 Score Type  egn
Protein Description  (M=1) PF00939//PF00999 - Sodium:sulfate symporter transmembrane region // Sodium/hydrogen exchanger family Gene Prediction Quality  validated
Protein length 

Sequence

Length: 580  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

7 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006814 sodium ion transport The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0006812 cation transport The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0015299 solute:proton antiporter activity Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out).
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100255888 314 579 + 266 Gaps:29 54.61 445 62.55 8e-87 pentatricopeptide repeat-containing protein At4g35850 mitochondrial-like
blastp_kegg lcl|pmum:103329766 409 574 + 166 none 37.39 444 75.30 2e-81 pentatricopeptide repeat-containing protein At4g35850 mitochondrial
blastp_kegg lcl|pper:PRUPE_ppa005766mg 409 574 + 166 none 37.39 444 75.30 3e-81 hypothetical protein
blastp_kegg lcl|mdm:103432021 409 575 + 167 none 37.70 443 72.46 7e-81 pentatricopeptide repeat-containing protein At4g35850 mitochondrial-like
blastp_kegg lcl|mdm:103425797 409 575 + 167 none 37.70 443 72.46 7e-81 pentatricopeptide repeat-containing protein At4g35850 mitochondrial-like
blastp_kegg lcl|mdm:103416951 409 575 + 167 none 37.70 443 72.46 7e-81 pentatricopeptide repeat-containing protein At4g35850 mitochondrial-like
blastp_kegg lcl|mdm:103404248 409 575 + 167 none 37.70 443 72.46 7e-81 pentatricopeptide repeat-containing protein At4g35850 mitochondrial-like
blastp_kegg lcl|pxb:103960964 409 575 + 167 none 37.70 443 72.46 9e-81 pentatricopeptide repeat-containing protein At4g35850 mitochondrial-like
blastp_kegg lcl|pxb:103959704 409 575 + 167 none 37.53 445 71.86 2e-79 pentatricopeptide repeat-containing protein At4g35850 mitochondrial-like
blastp_kegg lcl|tcc:TCM_017009 410 579 + 170 none 33.73 504 71.18 3e-79 Pentatricopeptide repeat superfamily protein
blastp_uniprot_sprot sp|Q8VYR5|PP351_ARATH 314 576 + 263 Gaps:26 53.83 444 54.39 3e-71 Pentatricopeptide repeat-containing protein At4g35850 mitochondrial OS Arabidopsis thaliana GN At4g35850 PE 1 SV 1
blastp_uniprot_sprot sp|Q8L7Z9|DIT2_SPIOL 165 231 + 67 none 11.88 564 79.10 7e-26 Dicarboxylate transporter 2 chloroplastic OS Spinacia oleracea GN DIT2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FMF7|DIT21_ARATH 144 235 + 92 Gaps:5 15.45 563 64.37 4e-25 Dicarboxylate transporter 2.1 chloroplastic OS Arabidopsis thaliana GN DIT2-1 PE 1 SV 1
blastp_uniprot_sprot sp|Q84WG1|NHX3_ARATH 206 298 + 93 none 18.49 503 54.84 2e-21 Sodium/hydrogen exchanger 3 OS Arabidopsis thaliana GN NHX3 PE 2 SV 2
blastp_uniprot_sprot sp|Q56XP4|NHX2_ARATH 202 297 + 96 Gaps:1 17.40 546 53.68 2e-20 Sodium/hydrogen exchanger 2 OS Arabidopsis thaliana GN NHX2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FMF8|DIT22_ARATH 144 231 + 88 Gaps:5 15.12 549 55.42 1e-17 Dicarboxylate transporter 2.2 chloroplastic OS Arabidopsis thaliana GN DIT2-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8S397|NHX4_ARATH 233 297 + 65 none 12.29 529 67.69 2e-17 Sodium/hydrogen exchanger 4 OS Arabidopsis thaliana GN NHX4 PE 2 SV 2
blastp_uniprot_sprot sp|Q41364|DIT1_SPIOL 164 239 + 76 none 13.36 569 51.32 2e-15 Dicarboxylate transporter 1 chloroplastic OS Spinacia oleracea GN DIT1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LXV3|DIT1_ARATH 164 239 + 76 none 13.64 557 44.74 4e-14 Dicarboxylate transporter 1 chloroplastic OS Arabidopsis thaliana GN DIT1 PE 1 SV 1
blastp_uniprot_sprot sp|Q68KI4|NHX1_ARATH 202 284 + 83 Gaps:1 15.24 538 50.00 9e-14 Sodium/hydrogen exchanger 1 OS Arabidopsis thaliana GN NHX1 PE 1 SV 2
rpsblast_cdd gnl|CDD|109974 165 239 + 75 none 15.92 471 45.33 5e-18 pfam00939 Na_sulph_symp Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif and belong to the subfamily SODIT1.
rpsblast_cdd gnl|CDD|162037 167 239 + 73 Gaps:1 16.67 444 41.89 2e-13 TIGR00785 dass anion transporter. The Divalent Anion:Na+ Symporter (DASS) Family (TC 2.A.47) Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+.
rpsblast_cdd gnl|CDD|30819 165 235 + 71 Gaps:1 15.62 461 40.28 2e-08 COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism].
rpsblast_kog gnl|CDD|37176 214 297 + 84 Gaps:3 14.78 575 41.18 5e-17 KOG1965 KOG1965 KOG1965 Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 166 166 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 165 239 75 PF00939 "Reactome:REACT_15518","Reactome:REACT_20633" Sodium:sulfate symporter transmembrane region IPR001898
PANTHER 410 578 169 PTHR24015:SF307 none none none
Coils 400 421 22 Coil none none none
Phobius 241 264 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 167 186 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 241 310 70 PF00999 none Sodium/hydrogen exchanger family IPR006153
PANTHER 410 578 169 PTHR24015 none none none
Phobius 265 275 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 236 240 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 215 235 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 425 459 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Phobius 298 579 282 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 187 214 28 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 276 297 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

3 Localization

Analysis Start End Length
TMHMM 215 234 19
TMHMM 241 263 22
TMHMM 283 305 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting