Protein : Qrob_P0041570.2 Q. robur
Protein Identifier  ? Qrob_P0041570.2 Organism . Name  Quercus robur
Score  98.3 Score Type  egn
Protein Description  (M=1) KOG0518 - Actin-binding cytoskeleton protein filamin [Cytoskeleton]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 512  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1017950 10 503 + 494 Gaps:7 51.48 946 88.91 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_020243 1 509 + 509 Gaps:7 52.02 965 88.25 0.0 RNA recognition motif-containing protein isoform 1
blastp_kegg lcl|pper:PRUPE_ppa020677mg 1 503 + 503 Gaps:6 65.05 764 89.34 0.0 hypothetical protein
blastp_kegg lcl|pmum:103322668 1 503 + 503 Gaps:8 50.25 993 89.18 0.0 nipped-B-like protein
blastp_kegg lcl|vvi:100244513 1 490 + 490 Gaps:2 52.92 926 86.94 0.0 uncharacterized LOC100244513
blastp_kegg lcl|cmo:103483467 1 509 + 509 Gaps:9 53.45 943 84.92 0.0 uncharacterized LOC103483467
blastp_kegg lcl|csv:101203535 1 509 + 509 Gaps:9 53.85 936 84.92 0.0 uncharacterized LOC101203535
blastp_kegg lcl|pvu:PHAVU_003G050400g 1 503 + 503 Gaps:8 51.93 957 82.29 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10004448mg 1 501 + 501 Gaps:11 69.68 709 81.98 0.0 hypothetical protein
blastp_kegg lcl|cit:102615780 1 501 + 501 Gaps:13 52.00 950 85.22 0.0 uncharacterized LOC102615780
blastp_pdb 2ds4_A 77 178 + 102 Gaps:1 89.38 113 33.66 2e-08 mol:protein length:113 Tripartite motif protein 45
blastp_pdb 2dnp_A 347 412 + 66 Gaps:3 72.22 90 38.46 1e-06 mol:protein length:90 RNA-binding protein 14
blastp_pdb 2dgt_A 345 414 + 70 Gaps:3 75.00 92 34.78 2e-06 mol:protein length:92 RNA-binding protein 30
blastp_pdb 1ksr_A 80 175 + 96 Gaps:5 91.00 100 31.87 8e-06 mol:protein length:100 GELATION FACTOR
blastp_uniprot_sprot sp|Q5BIM1|TRI45_BOVIN 79 178 + 100 Gaps:1 17.07 580 35.35 5e-08 Tripartite motif-containing protein 45 OS Bos taurus GN TRIM45 PE 2 SV 1
blastp_uniprot_sprot sp|E7FAM5|LIN41_DANRE 86 196 + 111 Gaps:6 12.99 824 38.32 2e-07 E3 ubiquitin-protein ligase TRIM71 OS Danio rerio GN trim71 PE 2 SV 1
blastp_uniprot_sprot sp|Q9H8W5|TRI45_HUMAN 79 179 + 101 Gaps:1 17.24 580 33.00 5e-07 Tripartite motif-containing protein 45 OS Homo sapiens GN TRIM45 PE 1 SV 2
blastp_uniprot_sprot sp|Q6PFY8|TRI45_MOUSE 79 178 + 100 Gaps:1 17.07 580 32.32 6e-07 Tripartite motif-containing protein 45 OS Mus musculus GN Trim45 PE 2 SV 2
blastp_uniprot_sprot sp|O75382|TRIM3_HUMAN 85 178 + 94 Gaps:3 12.23 744 32.97 2e-06 Tripartite motif-containing protein 3 OS Homo sapiens GN TRIM3 PE 1 SV 2
blastp_uniprot_sprot sp|Q6IQ97|RBM41_DANRE 345 430 + 86 Gaps:3 20.29 419 37.65 7e-06 RNA-binding protein 4.1 OS Danio rerio GN rbm4.1 PE 1 SV 1
rpsblast_cdd gnl|CDD|201358 78 176 + 99 Gaps:7 98.92 93 43.48 2e-22 pfam00630 Filamin Filamin/ABP280 repeat.
rpsblast_cdd gnl|CDD|197788 81 178 + 98 Gaps:10 94.62 93 44.32 6e-20 smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
rpsblast_cdd gnl|CDD|100104 344 410 + 67 Gaps:6 98.65 74 47.95 5e-15 cd00590 RRM RRM (RNA recognition motif) also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain) is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing RNA export and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs) proteins implicated in regulation of alternative splicing and protein components of small nuclear ribonucleoproteins (snRNPs)..
rpsblast_cdd gnl|CDD|197681 344 409 + 66 Gaps:7 100.00 73 43.84 6e-12 smart00360 RRM RNA recognition motif.
rpsblast_cdd gnl|CDD|200980 347 407 + 61 Gaps:6 95.71 70 44.78 1e-10 pfam00076 RRM_1 RNA recognition motif. (a.k.a. RRM RBD or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins including various hnRNP proteins proteins implicated in regulation of alternative splicing and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE) an autoimmune disease.
rpsblast_cdd gnl|CDD|31068 326 502 + 177 Gaps:8 60.46 306 24.86 1e-08 COG0724 COG0724 RNA-binding proteins (RRM domain) [General function prediction only].
rpsblast_cdd gnl|CDD|206427 345 408 + 64 Gaps:5 100.00 69 39.13 4e-08 pfam14259 RRM_6 RNA recognition motif (a.k.a. RRM RBD or RNP domain).
rpsblast_cdd gnl|CDD|130689 337 460 + 124 Gaps:16 21.35 562 27.50 2e-07 TIGR01628 PABP-1234 polyadenylate binding protein human types 1 2 3 4 family. These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis platelets broadly expressed and of unknown tissue range.
rpsblast_kog gnl|CDD|35738 60 178 + 119 Gaps:23 17.79 1113 36.36 4e-07 KOG0518 KOG0518 KOG0518 Actin-binding cytoskeleton protein filamin [Cytoskeleton].

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 344 410 67 SM00360 none RNA recognition motif IPR000504
Coils 308 329 22 Coil none none none
ProSiteProfiles 343 414 72 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
SMART 80 183 104 SM00557 none Filamin-type immunoglobulin domains IPR001298
SUPERFAMILY 78 178 101 SSF81296 none none IPR014756
Gene3D 313 414 102 G3DSA:3.30.70.330 none none IPR012677
Gene3D 79 178 100 G3DSA:2.60.40.10 none none IPR013783
Coils 14 36 23 Coil none none none
Pfam 78 176 99 PF00630 none Filamin/ABP280 repeat IPR017868
ProSiteProfiles 76 180 105 PS50194 none Filamin/ABP280 repeat profile. IPR017868
SUPERFAMILY 313 419 107 SSF54928 none none none
Pfam 347 407 61 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
PANTHER 342 436 95 PTHR24622 none none none
ProSiteProfiles 250 271 22 PS50103 none Zinc finger C3H1-type profile. IPR000571

0 Localization

0 Qtllist

0 Targeting