| Analysis | rpsblast_cdd | Start | 347 |
| End | 407 | Strand | + |
| Length | 61 | Note | Gaps:6 |
| Hit Coverage | 95.71 | Hit Length | 70 |
| Hit Pident | 44.78 | E Val | 1e-10 |
| Hit Description | pfam00076 RRM_1 RNA recognition motif. (a.k.a. RRM RBD or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins including various hnRNP proteins proteins implicated in regulation of alternative splicing and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE) an autoimmune disease. | Hit Pcons | 11.94 |
| Name | Qrob_P0041570.2 |
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0041570.2 | Quercus robur | 98.3 | egn | (M=1) KOG0518 - Actin-binding cytoskeleton protein filamin [Cytoskeleton]. | validated |
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