Protein : Qrob_P0040700.2 Q. robur

Protein Identifier  ? Qrob_P0040700.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) K03104 - signal recognition particle subunit SRP14 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 121  
Kegg Orthology  K03104

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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0006614 SRP-dependent cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
GO:0008312 7S RNA binding Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
GO:0048500 signal recognition particle A complex of protein and RNA which facilitates translocation of proteins across membranes.
GO:0005786 signal recognition particle, endoplasmic reticulum targeting A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana.
GO:0030942 endoplasmic reticulum signal peptide binding Interacting selectively and non-covalently with an endoplasmic reticulum signal peptide, a specific peptide sequence that acts as a signal to localize the protein within the endoplasmic reticulum.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0013s12890g 1 120 + 120 Gaps:1 100.00 121 86.78 2e-61 signal recognition particle 14 kDa family protein
blastp_kegg lcl|tcc:TCM_019902 1 120 + 120 Gaps:1 100.00 119 88.24 3e-61 Signal recognition particle 14 kDa protein
blastp_kegg lcl|gmx:100526909 1 119 + 119 none 99.17 120 87.39 4e-61 uncharacterized LOC100526909
blastp_kegg lcl|mtr:MTR_040s0033 1 119 + 119 none 99.17 120 85.71 2e-60 Signal recognition particle 14 kDa protein
blastp_kegg lcl|cam:101503551 1 119 + 119 none 99.17 120 86.55 5e-60 signal recognition particle 14 kDa protein-like
blastp_kegg lcl|pvu:PHAVU_011G004600g 1 119 + 119 none 99.17 120 86.55 2e-59 hypothetical protein
blastp_kegg lcl|cmo:103487869 1 120 + 120 Gaps:2 100.00 118 88.98 4e-59 signal recognition particle 14 kDa protein
blastp_kegg lcl|csv:101228792 1 120 + 120 Gaps:2 100.00 118 88.98 4e-59 signal recognition particle 14 kDa protein-like
blastp_kegg lcl|csv:101205402 1 120 + 120 Gaps:2 100.00 118 88.98 4e-59 signal recognition particle 14 kDa protein-like
blastp_kegg lcl|csv:101223050 1 120 + 120 Gaps:2 100.00 118 88.98 4e-59 signal recognition particle 14 kDa protein-like
blastp_pdb 1ry1_D 2 93 + 92 Gaps:1 87.74 106 44.09 1e-18 mol:protein length:106 PROTEIN (Signal recognition particle 14 kDa p
blastp_pdb 1e8s_B 2 93 + 92 Gaps:1 87.74 106 44.09 1e-18 mol:protein length:106 SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN
blastp_pdb 1e8o_D 2 93 + 92 Gaps:1 87.74 106 44.09 1e-18 mol:protein length:106 SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN
blastp_pdb 1e8o_B 2 93 + 92 Gaps:1 87.74 106 44.09 1e-18 mol:protein length:106 SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN
blastp_pdb 1914_A 1 93 + 93 Gaps:1 40.52 232 43.62 2e-18 mol:protein length:232 SIGNAL RECOGNITION PARTICLE 9/14 FUSION PROTE
blastp_uniprot_sprot sp|O04421|SRP14_ARATH 1 112 + 112 none 92.56 121 83.93 1e-56 Signal recognition particle 14 kDa protein OS Arabidopsis thaliana GN SRP14 PE 2 SV 2
blastp_uniprot_sprot sp|O04433|SRP14_ORYSJ 1 109 + 109 none 82.58 132 71.56 2e-45 Signal recognition particle 14 kDa protein OS Oryza sativa subsp. japonica GN SRP14 PE 2 SV 1
blastp_uniprot_sprot sp|Q4R5C7|SRP14_MACFA 1 101 + 101 Gaps:1 70.83 144 46.08 2e-22 Signal recognition particle 14 kDa protein OS Macaca fascicularis GN SRP14 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RBX7|SRP14_PONAB 1 100 + 100 Gaps:1 74.26 136 45.54 5e-22 Signal recognition particle 14 kDa protein OS Pongo abelii GN SRP14 PE 2 SV 1
blastp_uniprot_sprot sp|P37108|SRP14_HUMAN 1 100 + 100 Gaps:1 74.26 136 45.54 5e-22 Signal recognition particle 14 kDa protein OS Homo sapiens GN SRP14 PE 1 SV 2
blastp_uniprot_sprot sp|P16254|SRP14_MOUSE 1 93 + 93 Gaps:1 85.45 110 43.62 1e-18 Signal recognition particle 14 kDa protein OS Mus musculus GN Srp14 PE 1 SV 1
blastp_uniprot_sprot sp|P16255|SRP14_CANFA 1 93 + 93 Gaps:1 85.45 110 42.55 8e-18 Signal recognition particle 14 kDa protein OS Canis familiaris GN SRP14 PE 1 SV 2
blastp_uniprot_sprot sp|A6QQL9|SRP14_BOVIN 1 93 + 93 Gaps:1 85.45 110 42.55 8e-18 Signal recognition particle 14 kDa protein OS Bos taurus GN SRP14 PE 3 SV 1
blastp_uniprot_sprot sp|Q556L1|SRP14_DICDI 2 94 + 93 Gaps:3 78.05 123 38.54 2e-12 Signal recognition particle 14 kDa protein OS Dictyostelium discoideum GN srp14-1 PE 3 SV 1
blastp_uniprot_sprot sp|O16927|SRP14_CAEEL 7 98 + 92 Gaps:3 80.17 116 37.63 9e-07 Signal recognition particle 14 kDa protein OS Caenorhabditis elegans GN F25G6.8 PE 3 SV 1
rpsblast_cdd gnl|CDD|202191 4 93 + 90 Gaps:1 100.00 91 50.55 7e-25 pfam02290 SRP14 Signal recognition particle 14kD protein. The signal recognition particle (SRP) is a multimeric protein involved in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP14 and SRP9 form a complex essential for SRP RNA binding.
rpsblast_kog gnl|CDD|36972 2 112 + 111 Gaps:3 98.28 116 49.12 8e-20 KOG1761 KOG1761 KOG1761 Signal recognition particle subunit Srp14 [Intracellular trafficking secretion and vesicular transport].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 1 111 111 G3DSA:3.30.720.10 "Reactome:REACT_15380" none IPR009018
Pfam 4 93 90 PF02290 none Signal recognition particle 14kD protein IPR003210
SUPERFAMILY 1 96 96 SSF54762 "Reactome:REACT_15380" none IPR009018
PANTHER 1 103 103 PTHR12013 none none IPR003210
ProDom 1 70 70 PD009170 none RECOGNITION SIGNAL PARTICLE SRP14 RNA-BINDING ALU RNA 14KD 14KDA CDNA IPR003210

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting