Protein : Qrob_P0035450.2 Q. robur
Protein Identifier  ? Qrob_P0035450.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K02881 - large subunit ribosomal protein L18 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 151  
Kegg Orthology  K02881
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101298307 17 150 + 134 Gaps:1 84.91 159 92.59 6e-87 50S ribosomal protein L18 chloroplastic-like
blastp_kegg lcl|pop:POPTR_0155s00210g 2 150 + 149 Gaps:1 89.70 165 82.43 9e-84 ribosomal protein L18
blastp_kegg lcl|pmum:103322198 3 150 + 148 Gaps:5 87.35 166 84.14 1e-82 50S ribosomal protein L18 chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa012509mg 3 150 + 148 Gaps:5 87.35 166 83.45 5e-82 hypothetical protein
blastp_kegg lcl|sot:102595549 19 150 + 132 none 81.48 162 87.12 7e-81 50S ribosomal protein L18 chloroplastic-like
blastp_kegg lcl|sly:101250874 19 150 + 132 none 81.48 162 87.12 1e-80 50S ribosomal protein L18 chloroplastic-like
blastp_kegg lcl|pop:POPTR_0271s00220g 2 150 + 149 Gaps:10 80.51 195 77.07 4e-80 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1690720 18 150 + 133 Gaps:5 84.15 164 84.06 1e-79 50S ribosomal protein L18 chloroplast precursor putative
blastp_kegg lcl|pxb:103950357 1 150 + 150 Gaps:9 90.74 162 80.27 1e-79 50S ribosomal protein L18 chloroplastic-like
blastp_kegg lcl|mdm:103433117 3 150 + 148 Gaps:9 89.51 162 81.38 5e-79 50S ribosomal protein L18 chloroplastic-like
blastp_pdb 3bbo_Q 5 150 + 146 Gaps:9 96.27 161 76.13 7e-80 mol:protein length:161 Ribosomal Protein L18
blastp_pdb 1ovy_A 37 150 + 114 Gaps:4 91.67 120 67.27 1e-46 mol:protein length:120 50S Ribosomal Protein L18
blastp_pdb 4dhc_S 40 150 + 111 Gaps:8 91.96 112 52.43 3e-27 mol:protein length:112 50S Ribosomal Protein L18
blastp_pdb 4dha_S 40 150 + 111 Gaps:8 91.96 112 52.43 3e-27 mol:protein length:112 50S Ribosomal Protein L18
blastp_pdb 4abs_S 40 150 + 111 Gaps:8 91.96 112 52.43 3e-27 mol:protein length:112 50S RIBOSOMAL PROTEIN L18
blastp_pdb 3zvp_S 40 150 + 111 Gaps:8 91.96 112 52.43 3e-27 mol:protein length:112 50S RIBOSOMAL PROTEIN L18
blastp_pdb 3uzn_Q 40 150 + 111 Gaps:8 91.96 112 52.43 3e-27 mol:protein length:112 50S ribosomal protein L18
blastp_pdb 3uzk_Q 40 150 + 111 Gaps:8 91.96 112 52.43 3e-27 mol:protein length:112 50S ribosomal protein L18
blastp_pdb 3uzh_Q 40 150 + 111 Gaps:8 91.96 112 52.43 3e-27 mol:protein length:112 50S ribosomal protein L18
blastp_pdb 3uzf_Q 40 150 + 111 Gaps:8 91.96 112 52.43 3e-27 mol:protein length:112 50S ribosomal protein L18
blastp_uniprot_sprot sp|Q9SX68|RK18_ARATH 24 150 + 127 none 74.71 170 87.40 2e-78 50S ribosomal protein L18 chloroplastic OS Arabidopsis thaliana GN RPL18 PE 2 SV 1
blastp_uniprot_sprot sp|Q8SAY0|RK18_ORYSJ 17 150 + 134 Gaps:7 82.94 170 70.21 1e-64 50S ribosomal protein L18 chloroplastic OS Oryza sativa subsp. japonica GN RPL18 PE 2 SV 1
blastp_uniprot_sprot sp|Q5L3S3|RL18_GEOKA 37 150 + 114 Gaps:4 91.67 120 67.27 5e-46 50S ribosomal protein L18 OS Geobacillus kaustophilus (strain HTA426) GN rplR PE 3 SV 1
blastp_uniprot_sprot sp|P09415|RL18_GEOSE 37 150 + 114 Gaps:4 91.67 120 67.27 5e-46 50S ribosomal protein L18 OS Geobacillus stearothermophilus GN rplR PE 1 SV 1
blastp_uniprot_sprot sp|A4IJK4|RL18_GEOTN 37 150 + 114 Gaps:4 91.67 120 66.36 1e-45 50S ribosomal protein L18 OS Geobacillus thermodenitrificans (strain NG80-2) GN rplR PE 3 SV 1
blastp_uniprot_sprot sp|C5D3T3|RL18_GEOSW 37 150 + 114 Gaps:4 91.67 120 66.36 1e-45 50S ribosomal protein L18 OS Geobacillus sp. (strain WCH70) GN rplR PE 3 SV 1
blastp_uniprot_sprot sp|B5YDV9|RL18_DICT6 31 150 + 120 Gaps:2 96.72 122 57.63 6e-43 50S ribosomal protein L18 OS Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN rplR PE 3 SV 1
blastp_uniprot_sprot sp|B9KZX2|RL18_THERP 31 150 + 120 Gaps:1 95.97 124 58.82 2e-42 50S ribosomal protein L18 OS Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN rplR PE 3 SV 1
blastp_uniprot_sprot sp|A4XLR4|RL18_CALS8 32 150 + 119 Gaps:2 94.35 124 58.97 3e-42 50S ribosomal protein L18 OS Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN rplR PE 3 SV 2
blastp_uniprot_sprot sp|B9DM31|RL18_STACT 37 150 + 114 Gaps:4 91.67 120 59.09 2e-41 50S ribosomal protein L18 OS Staphylococcus carnosus (strain TM300) GN rplR PE 3 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 14 18 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 33 150 118 PTHR12899 none none none
Pfam 33 150 118 PF00861 none Ribosomal L18p/L5e family IPR005484
Gene3D 50 150 101 G3DSA:3.30.420.100 none none none
Phobius 1 18 18 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 5 13 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 4 4 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 19 150 132 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 33 148 116 SSF53137 none none none
Hamap 32 150 119 MF_01337_B none 50S ribosomal protein L18 [rplR]. IPR004389
TIGRFAM 34 150 117 TIGR00060 none L18_bact: ribosomal protein uL18 IPR004389

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 10   Mitochondrion 2 0.067 0.839 NON-PLANT 10