Protein : Qrob_P0034970.2 Q. robur
Protein Identifier  ? Qrob_P0034970.2 Organism . Name  Quercus robur
Score  32.0 Score Type  egn
Protein Description  (M=1) KOG0260//KOG0307//KOG0674//KOG0675//KOG0916//KOG1798//KOG1984//KOG1985//KOG3671//KOG3753 - RNA polymerase II large subunit [Transcription]. // Vesicle coat complex COPII subunit SEC31 [Intracellular trafficking secretion and vesicular transport]. // Calreticulin [Posttranslational modification protein turnover chaperones]. // Calnexin [Posttranslational modification protein turnover chaperones]. // 1 3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]. // DNA polymerase epsilon catalytic subunit A [Replication recombination and repair]. // Vesicle coat complex COPII subunit SFB3 [Intracellular trafficking secretion and vesicular transport]. // Vesicle coat complex COPII subunit SEC24/subunit SFB2 [Intracellular trafficking secretion and vesicular transport]. // Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms Cytoskeleton]. // Circadian clock protein period [Signal transduction mechanisms]. Code Enzyme  EC:6.6.1.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1716  
Kegg Orthology  K03403
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0 Synonyms

11 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0005783 endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
GO:0006457 protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
GO:0051082 unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
GO:0005509 calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO:0016851 magnesium chelatase activity Catalysis of the reaction: ATP + H(2)O + Mg(2+) + protoporphyrin IX = ADP + 2 H(+) + magnesium protoporphyrin IX + phosphate.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103415019 618 935 + 318 Gaps:65 49.55 773 73.11 5e-172 magnesium-chelatase subunit ChlH chloroplastic-like
blastp_kegg lcl|cmo:103499529 618 935 + 318 Gaps:65 27.71 1382 74.93 3e-171 magnesium-chelatase subunit ChlH chloroplastic
blastp_kegg lcl|csv:101213619 618 935 + 318 Gaps:65 27.71 1382 73.89 4e-169 magnesium-chelatase subunit ChlH chloroplastic-like
blastp_kegg lcl|pmum:103322036 618 935 + 318 Gaps:65 27.75 1380 74.67 6e-169 magnesium-chelatase subunit ChlH chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa000296mg 618 935 + 318 Gaps:65 28.82 1329 74.41 9e-169 hypothetical protein
blastp_kegg lcl|gmx:100806079 618 935 + 318 Gaps:66 27.75 1384 73.70 6e-168 magnesium-chelatase subunit ChlH chloroplastic-like
blastp_kegg lcl|cam:101510886 618 935 + 318 Gaps:66 27.77 1383 73.70 3e-167 magnesium-chelatase subunit ChlH chloroplastic-like
blastp_kegg lcl|vvi:100258964 606 935 + 330 Gaps:69 28.31 1381 73.15 3e-167 CHLH magnesium chelatase H subunit
blastp_kegg lcl|tcc:TCM_024638 618 935 + 318 Gaps:65 27.71 1382 73.37 9e-167 Magnesium-chelatase subunit chl isoform 1
blastp_kegg lcl|pxb:103941422 618 935 + 318 Gaps:65 27.75 1380 73.37 1e-166 magnesium-chelatase subunit ChlH chloroplastic-like
blastp_pdb 1hhn_A 1092 1176 + 85 Gaps:1 83.17 101 57.14 5e-22 mol:protein length:101 CALRETICULIN
blastp_pdb 3rg0_A 1101 1255 + 155 Gaps:22 40.06 332 42.86 4e-20 mol:protein length:332 Calreticulin
blastp_pdb 1jhn_A 1090 1212 + 123 Gaps:39 38.21 424 31.48 5e-19 mol:protein length:424 calnexin
blastp_pdb 3qx3_B 1300 1459 + 160 Gaps:4 19.68 803 34.18 2e-16 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 3qx3_A 1300 1459 + 160 Gaps:4 19.68 803 34.18 2e-16 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 1k9c_A 1092 1155 + 64 Gaps:1 85.14 74 55.56 2e-13 mol:protein length:74 CALRETICULIN
blastp_pdb 3l4k_A 1294 1445 + 152 Gaps:19 22.59 757 30.99 6e-10 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 3l4j_A 1294 1445 + 152 Gaps:19 22.59 757 30.99 6e-10 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 2rgr_A 1294 1445 + 152 Gaps:19 22.53 759 30.99 6e-10 mol:protein length:759 DNA topoisomerase 2
blastp_pdb 1bjt_A 1294 1445 + 152 Gaps:19 21.56 793 30.99 6e-10 mol:protein length:793 TOPOISOMERASE II
blastp_uniprot_sprot sp|B8ANF1|CHLH_ORYSI 618 935 + 318 Gaps:66 27.69 1387 69.01 5e-157 Magnesium-chelatase subunit ChlH chloroplastic OS Oryza sativa subsp. indica GN CHLH PE 3 SV 1
blastp_uniprot_sprot sp|Q10M50|CHLH_ORYSJ 618 935 + 318 Gaps:66 27.69 1387 69.01 8e-157 Magnesium-chelatase subunit ChlH chloroplastic OS Oryza sativa subsp. japonica GN CHLH PE 1 SV 1
blastp_uniprot_sprot sp|Q9FNB0|CHLH_ARATH 618 935 + 318 Gaps:66 27.81 1381 67.45 1e-156 Magnesium-chelatase subunit ChlH chloroplastic OS Arabidopsis thaliana GN CHLH PE 1 SV 1
blastp_uniprot_sprot sp|O04153|CALR3_ARATH 1090 1289 + 200 Gaps:5 46.93 424 73.87 6e-80 Calreticulin-3 OS Arabidopsis thaliana GN CRT3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SL03|CALS2_ARATH 350 488 + 139 Gaps:1 7.08 1950 82.61 2e-69 Callose synthase 2 OS Arabidopsis thaliana GN CALS2 PE 2 SV 3
blastp_uniprot_sprot sp|Q9AUE0|CALS1_ARATH 350 488 + 139 Gaps:1 7.08 1950 81.88 1e-68 Callose synthase 1 OS Arabidopsis thaliana GN CALS1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LXT9|CALS3_ARATH 350 478 + 129 Gaps:1 6.55 1955 83.59 7e-65 Callose synthase 3 OS Arabidopsis thaliana GN CALS3 PE 2 SV 3
blastp_uniprot_sprot sp|Q3B724|CALS5_ARATH 350 475 + 126 Gaps:1 6.50 1923 68.00 4e-52 Callose synthase 5 OS Arabidopsis thaliana GN CALS5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LUD7|CALS8_ARATH 352 476 + 125 Gaps:1 6.28 1976 67.74 4e-51 Putative callose synthase 8 OS Arabidopsis thaliana GN CALS8 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZPP1|CALR_BERST 1090 1234 + 145 Gaps:1 35.10 416 66.44 1e-49 Calreticulin OS Berberis stolonifera PE 2 SV 1

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 1157 1176 20 PR00626 none Calreticulin signature IPR001580
PRINTS 1190 1210 21 PR00626 none Calreticulin signature IPR001580
PRINTS 1119 1141 23 PR00626 none Calreticulin signature IPR001580
PRINTS 1091 1104 14 PR00626 none Calreticulin signature IPR001580
Coils 1411 1432 22 Coil none none none
Gene3D 1087 1197 111 G3DSA:2.10.250.10 none none IPR009033
SUPERFAMILY 1088 1192 105 SSF63887 none none IPR009033
Pfam 618 705 88 PF11965 "KEGG:00860+6.6.1.1","MetaCyc:PWY-5531","MetaCyc:PWY-7159" Domain of unknown function (DUF3479) IPR022571
Pfam 733 935 203 PF02514 none CobN/Magnesium Chelatase IPR003672
Pfam 1087 1209 123 PF00262 none Calreticulin family IPR001580
PANTHER 1090 1355 266 PTHR11073 none none IPR001580
Phobius 1310 1715 406 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1288 1309 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Coils 1226 1263 38 Coil none none none
SUPERFAMILY 1300 1451 152 SSF56719 none none IPR013760
Pfam 352 467 116 PF14288 "KEGG:00500+2.4.1.34","MetaCyc:PWY-6773" 1,3-beta-glucan synthase subunit FKS1, domain-1 IPR026899
Phobius 1 1287 1287 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 1306 1454 149 G3DSA:1.10.268.10 none none IPR013757
PANTHER 1090 1355 266 PTHR11073:SF6 none none none
Pfam 1301 1442 142 PF00521 none DNA gyrase/topoisomerase IV, subunit A IPR002205

0 Localization

0 Qtllist

0 Targeting