Protein : Qrob_P0033540.2 Q. robur
Protein Identifier  ? Qrob_P0033540.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 3.5.4.34 - tRNA(Ala)(adenine(37)) deaminase. Code Enzyme  EC:3.5.4.34
Gene Prediction Quality  validated Protein length 

Sequence

Length: 428  
Kegg Orthology  K15440
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0004000 adenosine deaminase activity Catalysis of the reaction: adenosine + H2O = inosine + NH3.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103938654 12 424 + 413 Gaps:5 94.23 433 74.02 0.0 tRNA-specific adenosine deaminase 1
blastp_kegg lcl|pper:PRUPE_ppa006021mg 11 424 + 414 Gaps:5 94.68 432 73.11 0.0 hypothetical protein
blastp_kegg lcl|vvi:100253329 7 427 + 421 Gaps:19 96.69 453 66.21 0.0 tRNA-specific adenosine deaminase 1-like
blastp_kegg lcl|mdm:103456191 13 424 + 412 Gaps:6 93.98 432 71.18 0.0 tRNA-specific adenosine deaminase 1
blastp_kegg lcl|tcc:TCM_005369 7 426 + 420 Gaps:31 91.31 426 70.95 0.0 Adenosine deaminases RNA binding RNA binding adenosine deaminases putative isoform 1
blastp_kegg lcl|fve:101298753 9 424 + 416 Gaps:24 94.71 416 70.05 0.0 tRNA-specific adenosine deaminase 1-like
blastp_kegg lcl|cam:101515616 1 425 + 425 Gaps:23 99.50 404 67.41 2e-179 tRNA-specific adenosine deaminase 1-like
blastp_kegg lcl|rcu:RCOM_1614770 12 427 + 416 Gaps:17 91.42 443 65.19 2e-179 protein with unknown function
blastp_kegg lcl|cit:102615864 12 416 + 405 Gaps:23 97.83 415 67.24 5e-177 tRNA-specific adenosine deaminase 1-like
blastp_kegg lcl|gmx:100789591 9 425 + 417 Gaps:20 96.83 410 67.76 7e-177 tRNA-specific adenosine deaminase 1-like
blastp_pdb 1zy7_B 33 425 + 393 Gaps:62 88.09 403 33.52 6e-38 mol:protein length:403 RNA-specific adenosine deaminase B1 isoform
blastp_pdb 1zy7_A 33 425 + 393 Gaps:62 88.09 403 33.52 6e-38 mol:protein length:403 RNA-specific adenosine deaminase B1 isoform
blastp_uniprot_sprot sp|Q9V3R6|ADAT1_DROME 16 424 + 409 Gaps:61 95.94 394 34.66 2e-42 tRNA-specific adenosine deaminase 1 OS Drosophila melanogaster GN adat PE 1 SV 1
blastp_uniprot_sprot sp|P51400|RED1_RAT 33 425 + 393 Gaps:74 51.34 711 34.25 2e-35 Double-stranded RNA-specific editase 1 OS Rattus norvegicus GN Adarb1 PE 1 SV 1
blastp_uniprot_sprot sp|Q91ZS8|RED1_MOUSE 33 425 + 393 Gaps:74 51.34 711 33.97 5e-35 Double-stranded RNA-specific editase 1 OS Mus musculus GN Adarb1 PE 1 SV 1
blastp_uniprot_sprot sp|Q22618|ADR2_CAEEL 35 425 + 391 Gaps:83 70.30 495 34.48 1e-34 Probable double-stranded RNA-specific adenosine deaminase OS Caenorhabditis elegans GN adr-2 PE 2 SV 2
blastp_uniprot_sprot sp|Q99MU3|DSRAD_MOUSE 40 425 + 386 Gaps:74 30.22 1178 34.83 4e-34 Double-stranded RNA-specific adenosine deaminase OS Mus musculus GN Adar PE 1 SV 2
blastp_uniprot_sprot sp|P55266|DSRAD_RAT 40 425 + 386 Gaps:68 30.30 1175 34.55 7e-34 Double-stranded RNA-specific adenosine deaminase OS Rattus norvegicus GN Adar PE 2 SV 1
blastp_uniprot_sprot sp|P55265|DSRAD_HUMAN 40 425 + 386 Gaps:72 29.04 1226 34.27 1e-33 Double-stranded RNA-specific adenosine deaminase OS Homo sapiens GN ADAR PE 1 SV 4
blastp_uniprot_sprot sp|P78563|RED1_HUMAN 33 425 + 393 Gaps:90 53.31 741 31.90 5e-33 Double-stranded RNA-specific editase 1 OS Homo sapiens GN ADARB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q28FE8|ADAT1_XENTR 27 424 + 398 Gaps:58 76.48 472 36.84 1e-31 tRNA-specific adenosine deaminase 1 OS Xenopus tropicalis GN adat1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NII1|ADAR_DROME 30 345 + 316 Gaps:47 41.57 676 35.23 5e-30 Double-stranded RNA-specific editase Adar OS Drosophila melanogaster GN Adar PE 1 SV 2
rpsblast_cdd gnl|CDD|190221 58 419 + 362 Gaps:47 100.00 329 40.43 1e-84 pfam02137 A_deamin Adenosine-deaminase (editase) domain. Adenosine deaminases acting on RNA (ADARs) can deaminate adenosine to form inosine. In long double-stranded RNA this process is non-specific it occurs site-specifically in RNA transcripts. The former is important in defence against viruses whereas the latter may affect splicing or untranslated regions. They are primarily nuclear proteins but a longer isoform of ADAR1 is found predominantly in the cytoplasm. ADARs are derived from the Tad1-like tRNA deaminases that are present across eukaryotes. These in turn belong to the nucleotide/nucleic acid deaminase superfamily and are characterized by a distinct insert between the two conserved cysteines that are involved in binding zinc.
rpsblast_cdd gnl|CDD|128825 11 424 + 414 Gaps:56 100.00 374 40.64 1e-83 smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
rpsblast_kog gnl|CDD|37988 7 425 + 419 Gaps:66 68.82 542 39.68 2e-72 KOG2777 KOG2777 KOG2777 tRNA-specific adenosine deaminase 1 [RNA processing and modification].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 11 424 414 SM00552 none tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase) IPR002466
ProSiteProfiles 58 423 366 PS50141 none Adenosine to inosine editase domain profile. IPR002466
PANTHER 179 427 249 PTHR10910 none none none
PANTHER 12 163 152 PTHR10910 none none none
Pfam 58 419 362 PF02137 none Adenosine-deaminase (editase) domain IPR002466

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting