Protein : Qrob_P0033490.2 Q. robur
Protein Identifier  ? Qrob_P0033490.2 Organism . Name  Quercus robur
Score  95.1 Score Type  egn
Protein Description  (M=3) K14397 - cleavage and polyadenylation specificity factor subunit 5 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 188  
Kegg Orthology  K14397
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003729 mRNA binding Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
GO:0005849 mRNA cleavage factor complex Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules.
GO:0006378 mRNA polyadenylation The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103483285 10 187 + 178 Gaps:33 72.50 200 97.93 1e-93 cleavage and polyadenylation specificity factor subunit 5
blastp_kegg lcl|csv:101204180 10 187 + 178 Gaps:33 72.50 200 97.93 1e-93 cleavage and polyadenylation specificity factor subunit 5-like
blastp_kegg lcl|rcu:RCOM_1496400 10 187 + 178 Gaps:33 72.50 200 94.48 5e-91 pre-mRNA cleavage factor im 25kD subunit putative
blastp_kegg lcl|pop:POPTR_0015s13200g 10 187 + 178 Gaps:33 71.78 202 94.48 6e-91 POPTRDRAFT_734153 hypothetical protein
blastp_kegg lcl|tcc:TCM_015155 10 187 + 178 Gaps:33 72.50 200 93.79 2e-90 Cleavage/polyadenylation specificity factor 25kDa subunit
blastp_kegg lcl|cic:CICLE_v10005929mg 10 187 + 178 Gaps:33 72.50 200 93.79 4e-90 hypothetical protein
blastp_kegg lcl|cit:102607311 10 187 + 178 Gaps:33 72.50 200 93.79 4e-90 cleavage and polyadenylation specificity factor subunit 5-like
blastp_kegg lcl|pxb:103960555 10 187 + 178 Gaps:33 72.50 200 93.10 4e-90 cleavage and polyadenylation specificity factor subunit 5-like
blastp_kegg lcl|mdm:103439744 10 187 + 178 Gaps:33 72.50 200 93.10 4e-90 cleavage and polyadenylation specificity factor subunit 5
blastp_kegg lcl|pmum:103333226 10 187 + 178 Gaps:33 72.50 200 93.10 4e-90 cleavage and polyadenylation specificity factor subunit 5
blastp_pdb 3n9u_B 10 182 + 173 Gaps:34 60.43 230 63.31 1e-49 mol:protein length:230 Cleavage and polyadenylation specificity fact
blastp_pdb 3n9u_A 10 182 + 173 Gaps:34 60.43 230 63.31 1e-49 mol:protein length:230 Cleavage and polyadenylation specificity fact
blastp_pdb 2cl3_A 10 182 + 173 Gaps:34 60.43 230 63.31 1e-49 mol:protein length:230 CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT
blastp_pdb 2j8q_B 10 182 + 173 Gaps:34 61.23 227 63.31 1e-49 mol:protein length:227 CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT
blastp_pdb 2j8q_A 10 182 + 173 Gaps:34 61.23 227 63.31 1e-49 mol:protein length:227 CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT
blastp_pdb 3bho_A 10 182 + 173 Gaps:34 66.83 208 63.31 1e-49 mol:protein length:208 Cleavage and polyadenylation specificity fact
blastp_pdb 3p6y_N 10 182 + 173 Gaps:34 68.81 202 63.31 1e-49 mol:protein length:202 Cleavage and polyadenylation specificity fact
blastp_pdb 3p6y_M 10 182 + 173 Gaps:34 68.81 202 63.31 1e-49 mol:protein length:202 Cleavage and polyadenylation specificity fact
blastp_pdb 3p6y_J 10 182 + 173 Gaps:34 68.81 202 63.31 1e-49 mol:protein length:202 Cleavage and polyadenylation specificity fact
blastp_pdb 3p6y_I 10 182 + 173 Gaps:34 68.81 202 63.31 1e-49 mol:protein length:202 Cleavage and polyadenylation specificity fact
blastp_uniprot_sprot sp|Q6DJE4|CPSF5_XENLA 10 182 + 173 Gaps:34 61.23 227 63.31 3e-49 Cleavage and polyadenylation specificity factor subunit 5 OS Xenopus laevis GN cpsf5 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RAI8|CPSF5_PONAB 10 182 + 173 Gaps:34 61.23 227 63.31 1e-48 Cleavage and polyadenylation specificity factor subunit 5 OS Pongo abelii GN NUDT21 PE 2 SV 1
blastp_uniprot_sprot sp|O43809|CPSF5_HUMAN 10 182 + 173 Gaps:34 61.23 227 63.31 1e-48 Cleavage and polyadenylation specificity factor subunit 5 OS Homo sapiens GN NUDT21 PE 1 SV 1
blastp_uniprot_sprot sp|Q3ZCA2|CPSF5_BOVIN 10 182 + 173 Gaps:34 61.23 227 63.31 1e-48 Cleavage and polyadenylation specificity factor subunit 5 OS Bos taurus GN NUDT21 PE 2 SV 1
blastp_uniprot_sprot sp|Q4KM65|CPSF5_RAT 10 182 + 173 Gaps:34 61.23 227 63.31 1e-48 Cleavage and polyadenylation specificity factor subunit 5 OS Rattus norvegicus GN Nudt21 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CQF3|CPSF5_MOUSE 10 182 + 173 Gaps:34 61.23 227 63.31 1e-48 Cleavage and polyadenylation specificity factor subunit 5 OS Mus musculus GN Nudt21 PE 2 SV 1
blastp_uniprot_sprot sp|Q7T3C6|CPSF5_DANRE 10 182 + 173 Gaps:34 60.96 228 62.59 1e-48 Cleavage and polyadenylation specificity factor subunit 5 OS Danio rerio GN cpsf5 PE 2 SV 1
blastp_uniprot_sprot sp|Q55E68|CPSF5_DICDI 10 182 + 173 Gaps:35 70.00 200 60.71 1e-45 Cleavage and polyadenylation specificity factor subunit 5 OS Dictyostelium discoideum GN cpsf5 PE 3 SV 1
rpsblast_cdd gnl|CDD|206040 10 180 + 171 Gaps:34 72.87 188 69.34 9e-62 pfam13869 NUDIX_2 Nucleotide hydrolase. Nudix hydrolases are found in all classes of organism and hydrolyse a wide range of organic pyrophosphates including nucleoside di- and triphosphates di-nucleoside and diphospho-inositol polyphosphates nucleotide sugars and RNA caps with varying degrees of substrate specificity.
rpsblast_kog gnl|CDD|36902 10 184 + 175 Gaps:34 63.80 221 67.38 3e-57 KOG1689 KOG1689 KOG1689 mRNA cleavage factor I subunit [RNA processing and modification].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 42 42 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PIRSF 9 187 179 PIRSF017888 none none IPR016706
Phobius 65 187 123 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 43 64 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 63 187 125 PTHR13047 none none IPR016706
PANTHER 10 40 31 PTHR13047 none none IPR016706
Pfam 63 180 118 PF13869 none Nucleotide hydrolase IPR016706
Pfam 10 41 32 PF13869 none Nucleotide hydrolase IPR016706

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting