Protein : Qrob_P0029990.2 Q. robur
Protein Identifier  ? Qrob_P0029990.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=2) KOG0252//KOG0253//KOG0254//KOG0255//KOG0569//KOG2533 - Inorganic phosphate transporter [Inorganic ion transport and metabolism]. // Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]. // Predicted transporter (major facilitator superfamily) [General function prediction only]. // Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]. // Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]. // Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 548  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0022857 transmembrane transporter activity Enables the transfer of a substance from one side of a membrane to the other.
GO:0022891 substrate-specific transmembrane transporter activity Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other.
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa003780mg 1 546 + 546 Gaps:10 99.82 549 83.94 0.0 hypothetical protein
blastp_kegg lcl|pmum:103342671 1 544 + 544 Gaps:10 99.45 549 83.70 0.0 plastidic glucose transporter 4
blastp_kegg lcl|gmx:100818957 1 544 + 544 Gaps:10 99.45 547 82.54 0.0 plastidic glucose transporter 4-like
blastp_kegg lcl|vvi:100232958 1 546 + 546 Gaps:11 99.82 542 82.26 0.0 plastid hexose transporter
blastp_kegg lcl|mdm:103426171 1 544 + 544 Gaps:12 99.46 551 80.84 0.0 plastidic glucose transporter 4-like
blastp_kegg lcl|cit:102631261 1 547 + 547 Gaps:12 100.00 543 81.58 0.0 plastidic glucose transporter 4-like
blastp_kegg lcl|mdm:103405749 1 544 + 544 Gaps:12 99.46 551 80.84 0.0 plastidic glucose transporter 4-like
blastp_kegg lcl|tcc:TCM_019409 1 545 + 545 Gaps:10 99.64 549 82.63 0.0 Plastid hexose transporter isoform 1
blastp_kegg lcl|cam:101511078 1 544 + 544 Gaps:18 99.44 539 83.77 0.0 plastidic glucose transporter 4-like
blastp_kegg lcl|pxb:103937469 1 544 + 544 Gaps:12 98.38 557 80.66 0.0 plastidic glucose transporter 4-like
blastp_uniprot_sprot sp|Q56ZZ7|PLST4_ARATH 1 544 + 544 Gaps:13 99.45 546 79.37 0.0 Plastidic glucose transporter 4 OS Arabidopsis thaliana GN At5g16150 PE 1 SV 2
blastp_uniprot_sprot sp|Q0WVE9|PLST1_ARATH 77 544 + 468 Gaps:11 89.50 524 43.07 6e-131 Probable plastidic glucose transporter 1 OS Arabidopsis thaliana GN At1g05030 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FYG3|PLST2_ARATH 70 543 + 474 Gaps:18 96.55 493 46.01 3e-124 Probable plastidic glucose transporter 2 OS Arabidopsis thaliana GN At1g67300 PE 2 SV 1
blastp_uniprot_sprot sp|Q2V4B9|PLST3_ARATH 104 543 + 440 Gaps:8 88.08 495 46.10 5e-119 Probable plastidic glucose transporter 3 OS Arabidopsis thaliana GN At1g79820 PE 2 SV 2
blastp_uniprot_sprot sp|C0SPB2|YWTG_BACSU 98 543 + 446 Gaps:13 95.62 457 35.24 6e-77 Putative metabolite transport protein YwtG OS Bacillus subtilis (strain 168) GN ywtG PE 3 SV 1
blastp_uniprot_sprot sp|O52733|XYLT_LACBR 111 543 + 433 Gaps:8 93.87 457 33.10 1e-72 D-xylose-proton symporter OS Lactobacillus brevis GN xylT PE 3 SV 1
blastp_uniprot_sprot sp|P46333|CSBC_BACSU 112 543 + 432 Gaps:22 92.41 461 36.15 8e-71 Probable metabolite transport protein CsbC OS Bacillus subtilis (strain 168) GN csbC PE 1 SV 3
blastp_uniprot_sprot sp|P47842|GTR3_CANFA 109 544 + 436 Gaps:25 91.11 495 33.92 1e-68 Solute carrier family 2 facilitated glucose transporter member 3 OS Canis familiaris GN SLC2A3 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R608|GTR3_PONAB 107 544 + 438 Gaps:21 91.33 496 34.66 6e-68 Solute carrier family 2 facilitated glucose transporter member 3 OS Pongo abelii GN SLC2A3 PE 2 SV 1
blastp_uniprot_sprot sp|P47843|GTR3_SHEEP 107 544 + 438 Gaps:25 91.70 494 34.00 9e-68 Solute carrier family 2 facilitated glucose transporter member 3 OS Ovis aries GN SLC2A3 PE 2 SV 1
rpsblast_cdd gnl|CDD|200987 109 543 + 435 Gaps:19 99.33 449 36.77 3e-79 pfam00083 Sugar_tr Sugar (and other) transporter.
rpsblast_cdd gnl|CDD|162084 97 539 + 443 Gaps:25 96.05 481 35.93 4e-75 TIGR00879 SP MFS transporter sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083).
rpsblast_cdd gnl|CDD|182225 109 546 + 438 Gaps:52 96.03 479 31.74 3e-63 PRK10077 xylE D-xylose transporter XylE Provisional.
rpsblast_cdd gnl|CDD|162095 98 485 + 388 Gaps:27 93.72 398 24.93 2e-21 TIGR00895 2A0115 benzoate transport.
rpsblast_cdd gnl|CDD|162097 143 538 + 396 Gaps:30 76.04 505 24.48 3e-18 TIGR00898 2A0119 cation transport protein.
rpsblast_cdd gnl|CDD|119392 107 525 + 419 Gaps:19 98.30 352 26.88 3e-16 cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters symporters and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions sugar phosphates drugs neurotransmitters nucleosides amino acids and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate while symporters and antiporters transport two substrates in the same or in opposite directions respectively across membranes. MFS proteins are typically 400 to 600 amino acids in length and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members GlpT (glycerol-3-phosphate transporter) LacY (lactose permease) and EmrD (multidrug transporter) MFS proteins are thought to function through a single substrate binding site alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4 which is impaired in type II diabetes and glucose-6-phosphate transporter (G6PT) which causes glycogen storage disease when mutated..
rpsblast_cdd gnl|CDD|162092 149 482 + 334 Gaps:25 78.77 405 25.39 1e-13 TIGR00891 2A0112 putative sialic acid transporter.
rpsblast_cdd gnl|CDD|130366 149 319 + 171 Gaps:20 25.74 742 26.70 3e-12 TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM HMM pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
rpsblast_cdd gnl|CDD|191813 111 492 + 382 Gaps:45 99.13 346 22.16 3e-11 pfam07690 MFS_1 Major Facilitator Superfamily.
rpsblast_cdd gnl|CDD|183191 93 313 + 221 Gaps:17 53.20 406 31.02 1e-09 PRK11551 PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT Provisional.

39 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 404 409 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
TIGRFAM 94 539 446 TIGR00879 "Reactome:REACT_15518" SP: MFS transporter, sugar porter (SP) family IPR003663
Phobius 442 466 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 102 102 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 149 169 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 431 441 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 207 232 26 PS00217 none Sugar transport proteins signature 2. IPR005829
Gene3D 105 294 190 G3DSA:1.20.1250.20 none none none
Gene3D 351 540 190 G3DSA:1.20.1250.20 none none none
Phobius 499 503 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 382 403 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PRINTS 114 124 11 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 467 479 13 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 444 465 22 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 357 367 11 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 202 221 20 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
Phobius 262 284 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 257 261 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 467 477 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 109 542 434 PF00083 none Sugar (and other) transporter IPR005828
PANTHER 35 545 511 PTHR24063:SF350 none none none
Phobius 170 177 8 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 202 223 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 197 201 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 95 540 446 SSF103473 none none IPR020846
Phobius 224 234 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 478 498 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 103 121 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 410 430 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 504 526 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

11 Localization

Analysis Start End Length
TMHMM 149 168 19
TMHMM 478 500 22
TMHMM 262 284 22
TMHMM 346 368 22
TMHMM 412 434 22
TMHMM 378 400 22
TMHMM 444 466 22
TMHMM 235 257 22
TMHMM 504 526 22
TMHMM 201 223 22
TMHMM 106 128 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting