Protein : Qrob_P0028450.2 Q. robur
Protein Identifier  ? Qrob_P0028450.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=2) K03511 - DNA polymerase kappa subunit [EC:2.7.7.7] Code Enzyme  EC:2.7.7.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 344  
Kegg Orthology  K03511
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003684 damaged DNA binding Interacting selectively and non-covalently with damaged DNA.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0003887 DNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10027948mg 3 333 + 331 Gaps:59 79.83 481 57.03 4e-129 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s30070g 3 333 + 331 Gaps:66 58.13 683 54.16 2e-126 POPTRDRAFT_175516 hypothetical protein
blastp_kegg lcl|tcc:TCM_007231 3 333 + 331 Gaps:74 57.28 707 55.31 3e-125 DNA/RNA polymerases superfamily protein isoform 1
blastp_kegg lcl|cit:102631401 3 332 + 330 Gaps:67 56.57 677 56.40 5e-125 DNA polymerase kappa-like
blastp_kegg lcl|pper:PRUPE_ppa017963mg 3 326 + 324 Gaps:54 58.75 623 57.38 4e-124 hypothetical protein
blastp_kegg lcl|vvi:100253205 3 323 + 321 Gaps:45 55.07 661 58.79 4e-124 DNA polymerase kappa-like
blastp_kegg lcl|pmum:103335090 3 326 + 324 Gaps:72 57.06 694 53.28 2e-122 DNA polymerase kappa
blastp_kegg lcl|cam:101496826 3 323 + 321 Gaps:65 55.61 669 54.84 8e-120 DNA polymerase kappa-like
blastp_kegg lcl|mdm:103436119 3 336 + 334 Gaps:76 58.77 684 50.25 2e-115 DNA polymerase kappa
blastp_kegg lcl|gmx:100816973 3 323 + 321 Gaps:63 54.87 678 52.42 3e-114 DNA polymerase kappa-like
blastp_pdb 1t94_B 3 149 + 147 Gaps:52 42.48 459 40.51 8e-33 mol:protein length:459 polymerase (DNA directed) kappa
blastp_pdb 1t94_A 3 149 + 147 Gaps:52 42.48 459 40.51 8e-33 mol:protein length:459 polymerase (DNA directed) kappa
blastp_pdb 3in5_B 3 149 + 147 Gaps:52 38.39 508 40.51 9e-33 mol:protein length:508 DNA polymerase kappa
blastp_pdb 3in5_A 3 149 + 147 Gaps:52 38.39 508 40.51 9e-33 mol:protein length:508 DNA polymerase kappa
blastp_pdb 2w7p_B 3 149 + 147 Gaps:52 38.39 508 40.51 9e-33 mol:protein length:508 DNA POLYMERASE KAPPA
blastp_pdb 2w7p_A 3 149 + 147 Gaps:52 38.39 508 40.51 9e-33 mol:protein length:508 DNA POLYMERASE KAPPA
blastp_pdb 2w7o_B 3 149 + 147 Gaps:52 38.39 508 40.51 9e-33 mol:protein length:508 DNA POLYMERASE KAPPA
blastp_pdb 2w7o_A 3 149 + 147 Gaps:52 38.39 508 40.51 9e-33 mol:protein length:508 DNA POLYMERASE KAPPA
blastp_pdb 2oh2_B 3 149 + 147 Gaps:52 38.39 508 40.51 9e-33 mol:protein length:508 DNA polymerase kappa
blastp_pdb 2oh2_A 3 149 + 147 Gaps:52 38.39 508 40.51 9e-33 mol:protein length:508 DNA polymerase kappa
blastp_uniprot_sprot sp|Q9QUG2|POLK_MOUSE 3 182 + 180 Gaps:53 26.41 852 39.11 1e-32 DNA polymerase kappa OS Mus musculus GN Polk PE 1 SV 1
blastp_uniprot_sprot sp|Q9UBT6|POLK_HUMAN 3 175 + 173 Gaps:55 25.06 870 38.07 7e-32 DNA polymerase kappa OS Homo sapiens GN POLK PE 1 SV 1
blastp_uniprot_sprot sp|P34409|POLK_CAEEL 3 168 + 166 Gaps:52 34.56 596 37.38 5e-25 DNA polymerase kappa OS Caenorhabditis elegans GN polk-1 PE 3 SV 3
blastp_uniprot_sprot sp|O74944|POLK_SCHPO 3 149 + 147 Gaps:47 35.10 547 26.04 7e-15 DNA polymerase kappa OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN mug40 PE 1 SV 3
blastp_uniprot_sprot sp|P58965|DPO4_THETN 3 153 + 151 Gaps:48 50.26 384 30.05 2e-11 DNA polymerase IV OS Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN dinB PE 3 SV 1
blastp_uniprot_sprot sp|Q7N7B6|DPO4_PHOLL 3 58 + 56 Gaps:3 15.10 351 56.60 1e-09 DNA polymerase IV OS Photorhabdus luminescens subsp. laumondii (strain TT01) GN dinB PE 3 SV 1
blastp_uniprot_sprot sp|Q9JRG1|DPO4_NEIMA 3 144 + 142 Gaps:51 52.56 352 29.19 2e-09 DNA polymerase IV OS Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN dinB PE 3 SV 1
blastp_uniprot_sprot sp|Q8EHU9|DPO4_SHEON 3 58 + 56 Gaps:3 14.85 357 56.60 5e-09 DNA polymerase IV OS Shewanella oneidensis (strain MR-1) GN dinB PE 3 SV 1
blastp_uniprot_sprot sp|A0KTR5|DPO4_SHESA 3 58 + 56 Gaps:3 14.76 359 58.49 5e-09 DNA polymerase IV OS Shewanella sp. (strain ANA-3) GN dinB PE 3 SV 1
blastp_uniprot_sprot sp|A1KUQ3|DPO4_NEIMF 3 144 + 142 Gaps:51 52.56 352 29.19 5e-09 DNA polymerase IV OS Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18) GN dinB PE 3 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 76 150 75 PF11799 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" impB/mucB/samB family C-terminal domain IPR017961
PANTHER 246 321 76 PTHR11076:SF12 none none none
SUPERFAMILY 75 147 73 SSF100879 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" none IPR017961
Pfam 21 52 32 PF11798 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" IMS family HHH motif IPR024728
Gene3D 22 76 55 G3DSA:1.10.150.20 none none none
PANTHER 3 177 175 PTHR11076:SF12 none none none
Gene3D 77 152 76 G3DSA:3.30.1490.100 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" none IPR017961
PANTHER 246 321 76 PTHR11076 none none none
PANTHER 3 177 175 PTHR11076 none none none
SUPERFAMILY 3 74 72 SSF56672 none none none
ProSiteProfiles 1 39 39 PS50173 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" UmuC domain profile. IPR017963

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting