Protein : Qrob_P0028440.2 Q. robur
Protein Identifier  ? Qrob_P0028440.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K03511 - DNA polymerase kappa subunit [EC:2.7.7.7] Code Enzyme  EC:2.7.7.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 279  
Kegg Orthology  K03511
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003684 damaged DNA binding Interacting selectively and non-covalently with damaged DNA.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0003887 DNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100253205 21 263 + 243 none 36.76 661 85.19 2e-147 DNA polymerase kappa-like
blastp_kegg lcl|cit:102631401 20 263 + 244 none 36.04 677 82.79 7e-144 DNA polymerase kappa-like
blastp_kegg lcl|csv:101212452 14 263 + 250 Gaps:5 35.35 693 82.04 2e-143 DNA polymerase kappa-like
blastp_kegg lcl|pop:POPTR_0001s30070g 21 263 + 243 none 35.58 683 83.13 2e-143 POPTRDRAFT_175516 hypothetical protein
blastp_kegg lcl|cmo:103495309 7 263 + 257 Gaps:5 35.10 718 80.16 7e-143 DNA polymerase kappa
blastp_kegg lcl|gmx:100816973 20 263 + 244 none 35.99 678 80.74 1e-140 DNA polymerase kappa-like
blastp_kegg lcl|tcc:TCM_007231 24 263 + 240 none 33.95 707 82.50 2e-140 DNA/RNA polymerases superfamily protein isoform 1
blastp_kegg lcl|fve:101292945 21 263 + 243 none 35.47 685 80.25 2e-139 DNA polymerase kappa-like
blastp_kegg lcl|cam:101496826 18 263 + 246 Gaps:1 36.92 669 80.16 5e-139 DNA polymerase kappa-like
blastp_kegg lcl|eus:EUTSA_v10011295mg 15 263 + 249 none 37.61 662 77.11 6e-139 hypothetical protein
blastp_pdb 3pzp_B 25 223 + 199 none 38.49 517 52.76 1e-68 mol:protein length:517 DNA polymerase kappa
blastp_pdb 3pzp_A 25 223 + 199 none 38.49 517 52.76 1e-68 mol:protein length:517 DNA polymerase kappa
blastp_pdb 3in5_B 34 223 + 190 none 37.40 508 54.21 5e-68 mol:protein length:508 DNA polymerase kappa
blastp_pdb 3in5_A 34 223 + 190 none 37.40 508 54.21 5e-68 mol:protein length:508 DNA polymerase kappa
blastp_pdb 2w7p_B 34 223 + 190 none 37.40 508 54.21 5e-68 mol:protein length:508 DNA POLYMERASE KAPPA
blastp_pdb 2w7p_A 34 223 + 190 none 37.40 508 54.21 5e-68 mol:protein length:508 DNA POLYMERASE KAPPA
blastp_pdb 2w7o_B 34 223 + 190 none 37.40 508 54.21 5e-68 mol:protein length:508 DNA POLYMERASE KAPPA
blastp_pdb 2w7o_A 34 223 + 190 none 37.40 508 54.21 5e-68 mol:protein length:508 DNA POLYMERASE KAPPA
blastp_pdb 2oh2_B 34 223 + 190 none 37.40 508 54.21 5e-68 mol:protein length:508 DNA polymerase kappa
blastp_pdb 2oh2_A 34 223 + 190 none 37.40 508 54.21 5e-68 mol:protein length:508 DNA polymerase kappa
blastp_uniprot_sprot sp|Q9UBT6|POLK_HUMAN 34 223 + 190 none 21.84 870 54.21 6e-65 DNA polymerase kappa OS Homo sapiens GN POLK PE 1 SV 1
blastp_uniprot_sprot sp|Q9QUG2|POLK_MOUSE 34 223 + 190 none 22.30 852 53.16 3e-64 DNA polymerase kappa OS Mus musculus GN Polk PE 1 SV 1
blastp_uniprot_sprot sp|O74944|POLK_SCHPO 37 259 + 223 Gaps:15 43.14 547 40.68 6e-53 DNA polymerase kappa OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN mug40 PE 1 SV 3
blastp_uniprot_sprot sp|P34409|POLK_CAEEL 32 218 + 187 Gaps:1 31.21 596 40.32 1e-41 DNA polymerase kappa OS Caenorhabditis elegans GN polk-1 PE 3 SV 3
blastp_uniprot_sprot sp|Q02WA3|DPO4_LACLS 110 267 + 158 Gaps:14 46.70 364 45.29 3e-40 DNA polymerase IV OS Lactococcus lactis subsp. cremoris (strain SK11) GN dinB PE 3 SV 1
blastp_uniprot_sprot sp|A2RNH9|DPO4_LACLM 110 267 + 158 Gaps:14 46.70 364 45.29 3e-40 DNA polymerase IV OS Lactococcus lactis subsp. cremoris (strain MG1363) GN dinB PE 3 SV 1
blastp_uniprot_sprot sp|B0TZS5|DPO4_FRAP2 112 263 + 152 Gaps:5 44.29 350 49.03 6e-39 DNA polymerase IV OS Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN dinB PE 3 SV 1
blastp_uniprot_sprot sp|A0Q6K9|DPO4_FRATN 113 263 + 151 Gaps:5 44.13 349 49.35 7e-39 DNA polymerase IV OS Francisella tularensis subsp. novicida (strain U112) GN dinB PE 3 SV 1
blastp_uniprot_sprot sp|Q8PCW8|DPO4_XANCP 116 259 + 144 Gaps:4 40.67 359 48.63 9e-39 DNA polymerase IV OS Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN dinB PE 3 SV 1
blastp_uniprot_sprot sp|Q4UQI2|DPO4_XANC8 116 259 + 144 Gaps:4 40.67 359 48.63 9e-39 DNA polymerase IV OS Xanthomonas campestris pv. campestris (strain 8004) GN dinB PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 118 260 143 PF00817 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" impB/mucB/samB family IPR001126
Phobius 1 258 258 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Coils 62 83 22 Coil none none none
PANTHER 1 259 259 PTHR11076:SF12 none none none
ProSiteProfiles 115 259 145 PS50173 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" UmuC domain profile. IPR017963
SUPERFAMILY 90 260 171 SSF56672 none none none
Phobius 278 278 1 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 259 277 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 173 261 89 G3DSA:3.30.70.270 none none none
PANTHER 1 259 259 PTHR11076 none none none

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting