Protein : Qrob_P0026900.2 Q. robur
Protein Identifier  ? Qrob_P0026900.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) PTHR13691:SF5 - 50S RIBOSOMAL PROTEIN L2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 229  
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015934 large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
GO:0016740 transferase activity Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_017084 44 228 + 185 Gaps:9 94.58 203 73.44 7e-94 50S ribosomal protein L2 putative
blastp_kegg lcl|cit:102625872 64 222 + 159 none 72.60 219 83.65 1e-93 60S ribosomal protein L2 mitochondrial-like
blastp_kegg lcl|cic:CICLE_v10016628mg 64 222 + 159 none 72.60 219 83.65 1e-93 hypothetical protein
blastp_kegg lcl|pop:POPTR_0017s04050g 28 228 + 201 Gaps:4 95.67 208 69.85 2e-90 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1120050 53 218 + 166 none 68.88 241 78.31 1e-89 50S ribosomal protein L2 putative
blastp_kegg lcl|pop:POPTR_0007s00710g 53 228 + 176 none 82.63 213 73.86 5e-89 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_002G275900g 67 228 + 162 none 80.20 202 79.01 1e-88 hypothetical protein
blastp_kegg lcl|vvi:100266379 65 216 + 152 none 78.76 193 84.21 2e-88 60S ribosomal protein L2 mitochondrial-like
blastp_kegg lcl|sot:102579158 44 228 + 185 Gaps:6 92.57 202 70.05 3e-84 60S ribosomal protein L2 mitochondrial-like
blastp_kegg lcl|cam:101511083 45 228 + 184 Gaps:4 91.37 197 71.11 3e-84 60S ribosomal protein L2 mitochondrial-like
blastp_pdb 3bbo_E 84 215 + 132 Gaps:6 47.58 269 53.91 3e-35 mol:protein length:269 Ribosomal Protein L2
blastp_pdb 3tvh_D 78 228 + 151 Gaps:8 52.57 272 50.35 9e-35 mol:protein length:272 50S ribosomal protein L2
blastp_pdb 3tve_D 78 228 + 151 Gaps:8 52.57 272 50.35 9e-35 mol:protein length:272 50S ribosomal protein L2
blastp_pdb 3fin_D 78 228 + 151 Gaps:8 52.57 272 50.35 9e-35 mol:protein length:272 50S ribosomal protein L2
blastp_pdb 3pyv_C 78 228 + 151 Gaps:8 52.77 271 50.35 9e-35 mol:protein length:271 50S ribosomal protein L2
blastp_pdb 3pyt_C 78 228 + 151 Gaps:8 52.77 271 50.35 9e-35 mol:protein length:271 50S ribosomal protein L2
blastp_pdb 3pyr_C 78 228 + 151 Gaps:8 52.77 271 50.35 9e-35 mol:protein length:271 50S ribosomal protein L2
blastp_pdb 3pyo_C 78 228 + 151 Gaps:8 52.77 271 50.35 9e-35 mol:protein length:271 50S ribosomal protein L2
blastp_pdb 3ms1_C 78 228 + 151 Gaps:8 52.00 275 50.35 1e-34 mol:protein length:275 50S ribosomal protein L2
blastp_pdb 3mrz_C 78 228 + 151 Gaps:8 52.00 275 50.35 1e-34 mol:protein length:275 50S ribosomal protein L2
blastp_uniprot_sprot sp|P92812|RM02_ORYSJ 77 222 + 146 Gaps:5 28.09 502 66.67 9e-56 60S ribosomal protein L2 mitochondrial OS Oryza sativa subsp. japonica GN RPL2 PE 2 SV 2
blastp_uniprot_sprot sp|Q2F969|RM02_ORYSI 77 222 + 146 Gaps:5 28.09 502 66.67 9e-56 60S ribosomal protein L2 mitochondrial OS Oryza sativa subsp. indica GN RPL2 PE 2 SV 2
blastp_uniprot_sprot sp|P0C8K6|RM02_ORYSA 77 222 + 146 Gaps:5 28.09 502 66.67 9e-56 60S ribosomal protein L2 mitochondrial OS Oryza sativa GN RPL2 PE 2 SV 1
blastp_uniprot_sprot sp|P26859|RM02_MARPO 84 227 + 144 Gaps:5 28.14 501 61.70 4e-48 60S ribosomal protein L2 mitochondrial OS Marchantia polymorpha GN RPL2 PE 3 SV 2
blastp_uniprot_sprot sp|B0K5P6|RL2_THEPX 32 221 + 190 Gaps:18 66.18 275 48.90 1e-42 50S ribosomal protein L2 OS Thermoanaerobacter sp. (strain X514) GN rplB PE 3 SV 1
blastp_uniprot_sprot sp|B0KCK3|RL2_THEP3 32 221 + 190 Gaps:18 66.18 275 48.90 1e-42 50S ribosomal protein L2 OS Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN rplB PE 3 SV 1
blastp_uniprot_sprot sp|Q6HPQ5|RL2_BACHK 32 221 + 190 Gaps:10 65.94 276 45.60 7e-42 50S ribosomal protein L2 OS Bacillus thuringiensis subsp. konkukian (strain 97-27) GN rplB PE 3 SV 1
blastp_uniprot_sprot sp|Q63H87|RL2_BACCZ 32 221 + 190 Gaps:10 65.94 276 45.60 7e-42 50S ribosomal protein L2 OS Bacillus cereus (strain ZK / E33L) GN rplB PE 3 SV 1
blastp_uniprot_sprot sp|B7HQU7|RL2_BACC7 32 221 + 190 Gaps:10 65.94 276 45.60 7e-42 50S ribosomal protein L2 OS Bacillus cereus (strain AH187) GN rplB PE 3 SV 1
blastp_uniprot_sprot sp|C1ET42|RL2_BACC3 32 221 + 190 Gaps:10 65.94 276 45.60 7e-42 50S ribosomal protein L2 OS Bacillus cereus (strain 03BB102) GN rplB PE 3 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 78 221 144 PTHR13691:SF5 none none IPR005880
SUPERFAMILY 84 220 137 SSF50104 none none IPR008991
Phobius 67 228 162 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 45 66 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 79 153 75 G3DSA:2.30.30.30 none none IPR014722
Phobius 1 44 44 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 82 214 133 PF03947 none Ribosomal Proteins L2, C-terminal domain IPR022669
PANTHER 78 221 144 PTHR13691 none none IPR002171
Gene3D 154 226 73 G3DSA:4.10.950.10 none none IPR014726

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting