Protein : Qrob_P0022510.2 Q. robur
Protein Identifier  ? Qrob_P0022510.2 Organism . Name  Quercus robur
Score  33.0 Score Type  egn
Protein Description  (M=1) KOG0260//KOG0307//KOG0674//KOG0675//KOG0916//KOG1798//KOG1830//KOG1984//KOG1985//KOG3671 - RNA polymerase II large subunit [Transcription]. // Vesicle coat complex COPII subunit SEC31 [Intracellular trafficking secretion and vesicular transport]. // Calreticulin [Posttranslational modification protein turnover chaperones]. // Calnexin [Posttranslational modification protein turnover chaperones]. // 1 3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]. // DNA polymerase epsilon catalytic subunit A [Replication recombination and repair]. // Wiskott Aldrich syndrome proteins [Cytoskeleton]. // Vesicle coat complex COPII subunit SFB3 [Intracellular trafficking secretion and vesicular transport]. // Vesicle coat complex COPII subunit SEC24/subunit SFB2 [Intracellular trafficking secretion and vesicular transport]. // Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms Cytoskeleton]. Code Enzyme  EC:6.6.1.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1646  
Kegg Orthology  K03403
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0 Synonyms

11 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0005783 endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
GO:0006457 protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
GO:0051082 unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
GO:0005509 calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO:0016851 magnesium chelatase activity Catalysis of the reaction: ATP + H(2)O + Mg(2+) + protoporphyrin IX = ADP + 2 H(+) + magnesium protoporphyrin IX + phosphate.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103415019 571 915 + 345 Gaps:37 49.42 773 80.63 0.0 magnesium-chelatase subunit ChlH chloroplastic-like
blastp_kegg lcl|cmo:103499529 571 915 + 345 Gaps:37 27.64 1382 82.20 0.0 magnesium-chelatase subunit ChlH chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa000296mg 571 915 + 345 Gaps:37 28.74 1329 81.94 0.0 hypothetical protein
blastp_kegg lcl|pmum:103322036 571 915 + 345 Gaps:37 27.68 1380 82.20 0.0 magnesium-chelatase subunit ChlH chloroplastic
blastp_kegg lcl|csv:101213619 571 915 + 345 Gaps:37 27.64 1382 81.15 0.0 magnesium-chelatase subunit ChlH chloroplastic-like
blastp_kegg lcl|gmx:100806079 571 915 + 345 Gaps:38 27.67 1384 80.94 0.0 magnesium-chelatase subunit ChlH chloroplastic-like
blastp_kegg lcl|mdm:103456287 571 915 + 345 Gaps:37 27.68 1380 80.89 0.0 magnesium-chelatase subunit ChlH chloroplastic
blastp_kegg lcl|pxb:103933269 571 915 + 345 Gaps:37 27.68 1380 80.89 0.0 magnesium-chelatase subunit ChlH chloroplastic
blastp_kegg lcl|pxb:103941422 571 915 + 345 Gaps:37 27.68 1380 80.89 0.0 magnesium-chelatase subunit ChlH chloroplastic-like
blastp_kegg lcl|mdm:103431022 571 915 + 345 Gaps:37 27.68 1380 80.63 0.0 magnesium-chelatase subunit ChlH chloroplastic
blastp_pdb 1hhn_A 1160 1244 + 85 Gaps:1 83.17 101 55.95 3e-21 mol:protein length:101 CALRETICULIN
blastp_pdb 3rg0_A 1169 1323 + 155 Gaps:22 40.06 332 42.86 3e-20 mol:protein length:332 Calreticulin
blastp_pdb 1jhn_A 1158 1280 + 123 Gaps:39 38.21 424 30.86 3e-18 mol:protein length:424 calnexin
blastp_pdb 3qx3_B 1368 1524 + 157 Gaps:4 19.30 803 34.19 1e-16 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 3qx3_A 1368 1524 + 157 Gaps:4 19.30 803 34.19 1e-16 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 1k9c_A 1160 1223 + 64 Gaps:1 85.14 74 53.97 1e-12 mol:protein length:74 CALRETICULIN
blastp_pdb 1bjt_A 1362 1529 + 168 Gaps:20 23.46 793 30.11 5e-10 mol:protein length:793 TOPOISOMERASE II
blastp_pdb 1bgw_A 1362 1529 + 168 Gaps:20 23.46 793 30.11 5e-10 mol:protein length:793 TOPOISOMERASE
blastp_pdb 3l4k_A 1362 1522 + 161 Gaps:19 23.78 757 29.44 1e-09 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 3l4j_A 1362 1522 + 161 Gaps:19 23.78 757 29.44 1e-09 mol:protein length:757 DNA topoisomerase 2
blastp_uniprot_sprot sp|Q9FNB0|CHLH_ARATH 571 915 + 345 Gaps:38 27.73 1381 74.93 0.0 Magnesium-chelatase subunit ChlH chloroplastic OS Arabidopsis thaliana GN CHLH PE 1 SV 1
blastp_uniprot_sprot sp|B8ANF1|CHLH_ORYSI 571 915 + 345 Gaps:38 27.61 1387 76.24 0.0 Magnesium-chelatase subunit ChlH chloroplastic OS Oryza sativa subsp. indica GN CHLH PE 3 SV 1
blastp_uniprot_sprot sp|Q10M50|CHLH_ORYSJ 571 915 + 345 Gaps:38 27.61 1387 76.24 0.0 Magnesium-chelatase subunit ChlH chloroplastic OS Oryza sativa subsp. japonica GN CHLH PE 1 SV 1
blastp_uniprot_sprot sp|O04153|CALR3_ARATH 1158 1357 + 200 Gaps:5 46.93 424 73.37 3e-79 Calreticulin-3 OS Arabidopsis thaliana GN CRT3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9RFD5|BCHH_RHOS4 619 915 + 297 Gaps:30 26.91 1193 36.45 2e-50 Magnesium-chelatase subunit H OS Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN bchH PE 3 SV 1
blastp_uniprot_sprot sp|P26162|BCHH_RHOCB 620 912 + 293 Gaps:35 26.41 1189 36.31 1e-49 Magnesium-chelatase subunit H OS Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN bchH PE 3 SV 2
blastp_uniprot_sprot sp|Q9ZPP1|CALR_BERST 1158 1302 + 145 Gaps:1 35.10 416 65.75 5e-49 Calreticulin OS Berberis stolonifera PE 2 SV 1
blastp_uniprot_sprot sp|Q40401|CALR_NICPL 1156 1296 + 141 none 33.89 416 61.70 1e-46 Calreticulin OS Nicotiana plumbaginifolia GN CAL1 PE 2 SV 1
blastp_uniprot_sprot sp|P93508|CALR_RICCO 1158 1293 + 136 none 32.77 415 65.44 1e-45 Calreticulin OS Ricinus communis PE 2 SV 1
blastp_uniprot_sprot sp|O81919|CALR_BETVU 1158 1302 + 145 Gaps:1 35.10 416 61.64 1e-45 Calreticulin OS Beta vulgaris PE 2 SV 1

23 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1158 1423 266 PTHR11073 none none IPR001580
Pfam 1369 1510 142 PF00521 none DNA gyrase/topoisomerase IV, subunit A IPR002205
Gene3D 1155 1265 111 G3DSA:2.10.250.10 none none IPR009033
Pfam 384 421 38 PF14288 "KEGG:00500+2.4.1.34","MetaCyc:PWY-6773" 1,3-beta-glucan synthase subunit FKS1, domain-1 IPR026899
Phobius 1378 1645 268 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Coils 1479 1500 22 Coil none none none
SUPERFAMILY 917 928 12 SSF56672 none none none
SUPERFAMILY 984 1047 64 SSF56672 none none none
Pfam 567 710 144 PF11965 "KEGG:00860+6.6.1.1","MetaCyc:PWY-5531","MetaCyc:PWY-7159" Domain of unknown function (DUF3479) IPR022571
Phobius 1 1355 1355 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PRINTS 1159 1172 14 PR00626 none Calreticulin signature IPR001580
PRINTS 1225 1244 20 PR00626 none Calreticulin signature IPR001580
PRINTS 1187 1209 23 PR00626 none Calreticulin signature IPR001580
PRINTS 1258 1278 21 PR00626 none Calreticulin signature IPR001580
PANTHER 1158 1423 266 PTHR11073:SF6 none none none
Gene3D 1374 1523 150 G3DSA:1.10.268.10 none none IPR013757
SUPERFAMILY 1368 1522 155 SSF56719 none none IPR013760
Pfam 1155 1277 123 PF00262 none Calreticulin family IPR001580
Phobius 1356 1377 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 714 912 199 PF02514 none CobN/Magnesium Chelatase IPR003672
Coils 1502 1530 29 Coil none none none
Coils 1294 1331 38 Coil none none none
SUPERFAMILY 1156 1260 105 SSF63887 none none IPR009033

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting