Protein : Qrob_P0021320.2 Q. robur
Protein Identifier  ? Qrob_P0021320.2 Organism . Name  Quercus robur
Score  41.4 Score Type  egn
Protein Description  (M=2) PTHR13711:SF187 - HIGH MOBILITY GROUP B PROTEIN 1 (PTHR13711:SF187) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 139  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0003682 chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:547975 1 103 + 103 Gaps:18 78.29 152 70.59 1e-42 HMG-1 like protein gene
blastp_kegg lcl|pvu:PHAVU_009G012000g 1 108 + 108 Gaps:18 81.58 152 64.52 5e-41 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_472301 1 136 + 136 Gaps:24 100.00 142 65.49 9e-41 hypothetical protein
blastp_kegg lcl|ath:AT1G20693 1 136 + 136 Gaps:24 100.00 142 65.49 9e-41 HMGB2 high mobility group B2 protein
blastp_kegg lcl|eus:EUTSA_v10009970mg 1 133 + 133 Gaps:24 54.09 257 66.91 2e-40 hypothetical protein
blastp_kegg lcl|vvi:100246082 1 121 + 121 Gaps:16 89.54 153 65.69 2e-40 high mobility group-like
blastp_kegg lcl|cmo:103493820 1 121 + 121 Gaps:20 89.12 147 70.23 3e-39 HMG1/2-like protein
blastp_kegg lcl|aly:ARALYDRAFT_472304 1 133 + 133 Gaps:29 96.45 141 67.65 6e-39 hypothetical protein
blastp_kegg lcl|csv:101203891 1 121 + 121 Gaps:20 89.73 146 70.23 6e-38 HMG1/2-like protein-like
blastp_kegg lcl|vvi:100257544 1 121 + 121 Gaps:20 89.10 156 61.15 2e-37 high mobility group B2 protein-like
blastp_pdb 1j3c_A 38 99 + 62 Gaps:14 96.20 79 39.47 2e-08 mol:protein length:79 High mobility group protein 2
blastp_pdb 2yrq_A 29 99 + 71 Gaps:14 49.13 173 40.00 4e-08 mol:protein length:173 High mobility group protein B1
blastp_pdb 1j3d_A 38 99 + 62 Gaps:14 97.44 78 39.47 6e-08 mol:protein length:78 High mobility group protein 2
blastp_pdb 1hmf_A 38 99 + 62 Gaps:14 98.70 77 40.79 8e-08 mol:protein length:77 HIGH MOBILITY GROUP PROTEIN FRAGMENT-B
blastp_pdb 1hme_A 38 99 + 62 Gaps:14 98.70 77 40.79 8e-08 mol:protein length:77 HIGH MOBILITY GROUP PROTEIN FRAGMENT-B
blastp_pdb 2gzk_A 32 99 + 68 Gaps:17 53.46 159 41.18 2e-07 mol:protein length:159 Sex-determining region on Y / HMGB1
blastp_pdb 2yqi_A 34 99 + 66 Gaps:14 98.77 81 35.00 8e-07 mol:protein length:81 High mobility group protein B3
blastp_pdb 1nhn_A 41 99 + 59 Gaps:14 90.12 81 38.36 4e-06 mol:protein length:81 HIGH MOBILITY GROUP PROTEIN 1
blastp_pdb 1nhm_A 41 99 + 59 Gaps:14 90.12 81 38.36 4e-06 mol:protein length:81 HIGH MOBILITY GROUP PROTEIN 1
blastp_pdb 1hsn_A 41 99 + 59 Gaps:14 92.41 79 38.36 5e-06 mol:protein length:79 HIGH MOBILITY GROUP PROTEIN 1
blastp_uniprot_sprot sp|P26585|HMGL_SOYBN 1 103 + 103 Gaps:18 78.29 152 70.59 5e-44 HMG1/2-like protein OS Glycine max PE 2 SV 1
blastp_uniprot_sprot sp|O49596|HMGB2_ARATH 1 121 + 121 Gaps:23 88.89 144 64.84 2e-36 High mobility group B protein 2 OS Arabidopsis thaliana GN HMGB2 PE 1 SV 1
blastp_uniprot_sprot sp|P93047|HMGB3_ARATH 1 121 + 121 Gaps:28 88.65 141 66.40 1e-35 High mobility group B protein 3 OS Arabidopsis thaliana GN HMGB3 PE 1 SV 1
blastp_uniprot_sprot sp|P40619|HMGL_IPONI 1 125 + 125 Gaps:25 90.28 144 60.77 2e-33 HMG1/2-like protein OS Ipomoea nil PE 2 SV 1
blastp_uniprot_sprot sp|P40620|HMGL_VICFA 1 121 + 121 Gaps:21 89.93 149 55.22 5e-29 HMG1/2-like protein OS Vicia faba PE 2 SV 1
blastp_uniprot_sprot sp|Q42344|HMGB4_ARATH 1 138 + 138 Gaps:35 99.28 138 51.09 4e-27 High mobility group B protein 4 OS Arabidopsis thaliana GN HMGB4 PE 1 SV 1
blastp_uniprot_sprot sp|P27347|MNB1B_MAIZE 1 104 + 104 Gaps:17 74.52 157 55.56 2e-26 DNA-binding protein MNB1B OS Zea mays GN MNB1B PE 1 SV 1
blastp_uniprot_sprot sp|P40621|HMGL_WHEAT 1 98 + 98 Gaps:16 69.57 161 55.36 1e-19 HMG1/2-like protein OS Triticum aestivum PE 2 SV 1
blastp_uniprot_sprot sp|O49595|HMGB1_ARATH 35 132 + 98 Gaps:35 67.98 178 48.76 2e-18 High mobility group B protein 1 OS Arabidopsis thaliana GN HMGB1 PE 1 SV 1
blastp_uniprot_sprot sp|O49597|HMGB5_ARATH 1 116 + 116 Gaps:24 97.60 125 36.89 2e-17 High mobility group B protein 5 OS Arabidopsis thaliana GN HMGB5 PE 2 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 35 69 35 G3DSA:1.10.30.10 none none IPR009071
Pfam 43 69 27 PF00505 none HMG (high mobility group) box IPR009071
PANTHER 27 138 112 PTHR13711:SF187 none none IPR031061
SMART 42 98 57 SM00398 none high mobility group IPR009071
Gene3D 73 97 25 G3DSA:1.10.30.10 none none IPR009071
ProSiteProfiles 43 97 55 PS50118 none HMG boxes A and B DNA-binding domains profile. IPR009071
SUPERFAMILY 30 102 73 SSF47095 none none IPR009071
Coils 79 100 22 Coil none none none
PANTHER 27 138 112 PTHR13711 none none none

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting