Protein : Qrob_P0019500.2 Q. robur

Protein Identifier  ? Qrob_P0019500.2 Organism . Name  Quercus robur
Score  3.0 Score Type  egn
Protein Description  (M=1) PTHR13710//PTHR13710:SF75 - DNA HELICASE RECQ FAMILY MEMBER // SUBFAMILY NOT NAMED Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1136  
Kegg Orthology  K10901

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0 Synonyms

11 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0008026 ATP-dependent helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO:0044237 cellular metabolic process The chemical reactions and pathways by which individual cells transform chemical substances.
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO:0043140 ATP-dependent 3'-5' DNA helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; drives the unwinding of the DNA helix in the direction 3' to 5'.
GO:0006310 DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10000077mg 6 1127 + 1122 Gaps:22 98.00 1151 75.27 0.0 hypothetical protein
blastp_kegg lcl|cit:102610752 6 1127 + 1122 Gaps:22 93.07 1212 75.00 0.0 ATP-dependent DNA helicase Q-like 4A-like
blastp_kegg lcl|rcu:RCOM_0321820 6 1135 + 1130 Gaps:25 92.05 1233 75.33 0.0 DNA helicase hus2 putative
blastp_kegg lcl|pmum:103327108 6 1134 + 1129 Gaps:16 94.99 1197 73.26 0.0 ATP-dependent DNA helicase Q-like 4A
blastp_kegg lcl|pper:PRUPE_ppa000416mg 6 1134 + 1129 Gaps:57 98.33 1198 71.65 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0003s01160g 6 1093 + 1088 Gaps:21 91.54 1194 75.39 0.0 POPTRDRAFT_553405 DNA helicase family protein
blastp_kegg lcl|tcc:TCM_006933 6 1127 + 1122 Gaps:28 90.24 1250 74.91 0.0 DNA helicase (RECQl4A) isoform 2
blastp_kegg lcl|vvi:100245652 7 1131 + 1125 Gaps:19 92.65 1224 74.78 0.0 ATP-dependent DNA helicase Q-like 4A-like
blastp_kegg lcl|pxb:103946115 6 1132 + 1127 Gaps:19 92.80 1222 72.66 0.0 ATP-dependent DNA helicase Q-like 4A
blastp_kegg lcl|fve:101310132 6 1134 + 1129 Gaps:23 98.44 1156 71.09 0.0 ATP-dependent DNA helicase Q-like 4A-like
blastp_pdb 2wwy_B 349 881 + 533 Gaps:39 85.96 591 42.32 9e-130 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2wwy_A 349 881 + 533 Gaps:39 85.96 591 42.32 9e-130 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2v1x_B 349 881 + 533 Gaps:39 85.96 591 42.32 9e-130 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2v1x_A 349 881 + 533 Gaps:39 85.96 591 42.32 9e-130 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 1oyy_A 365 871 + 507 Gaps:35 91.78 523 38.75 8e-100 mol:protein length:523 ATP-dependent DNA helicase
blastp_pdb 1oyw_A 365 871 + 507 Gaps:35 91.78 523 38.75 8e-100 mol:protein length:523 ATP-dependent DNA helicase
blastp_pdb 1hv8_B 585 712 + 128 Gaps:2 34.33 367 27.78 3e-11 mol:protein length:367 PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669
blastp_pdb 1hv8_A 585 712 + 128 Gaps:2 34.33 367 27.78 3e-11 mol:protein length:367 PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669
blastp_pdb 2rhf_A 949 1022 + 74 Gaps:2 93.51 77 44.44 1e-10 mol:protein length:77 DNA helicase RecQ
blastp_pdb 1s2m_A 380 709 + 330 Gaps:47 81.25 400 24.31 4e-09 mol:protein length:400 Putative ATP-dependent RNA helicase DHH1
blastp_uniprot_sprot sp|Q8L840|RQL4A_ARATH 6 1126 + 1121 Gaps:44 93.35 1188 66.10 0.0 ATP-dependent DNA helicase Q-like 4A OS Arabidopsis thaliana GN RECQL4A PE 2 SV 1
blastp_uniprot_sprot sp|Q9FT70|RQL4B_ARATH 6 1077 + 1072 Gaps:59 91.04 1150 62.94 0.0 ATP-dependent DNA helicase Q-like 4B OS Arabidopsis thaliana GN RECQL4B PE 2 SV 1
blastp_uniprot_sprot sp|Q09811|HUS2_SCHPO 358 1024 + 667 Gaps:65 52.11 1328 39.45 1e-152 ATP-dependent DNA helicase hus2/rqh1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rqh1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9DEY9|BLM_XENLA 346 1071 + 726 Gaps:66 51.32 1364 39.57 5e-142 Bloom syndrome protein homolog OS Xenopus laevis GN blm PE 2 SV 1
blastp_uniprot_sprot sp|Q9VGI8|BLM_DROME 353 1030 + 678 Gaps:52 43.58 1487 42.90 6e-142 Bloom syndrome protein homolog OS Drosophila melanogaster GN Blm PE 1 SV 1
blastp_uniprot_sprot sp|O88700|BLM_MOUSE 354 1019 + 666 Gaps:67 44.99 1416 42.39 2e-139 Bloom syndrome protein homolog OS Mus musculus GN Blm PE 1 SV 1
blastp_uniprot_sprot sp|P54132|BLM_HUMAN 352 1019 + 668 Gaps:68 45.31 1417 41.28 9e-137 Bloom syndrome protein OS Homo sapiens GN BLM PE 1 SV 1
blastp_uniprot_sprot sp|P35187|SGS1_YEAST 353 939 + 587 Gaps:38 40.57 1447 41.74 6e-136 ATP-dependent helicase SGS1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SGS1 PE 1 SV 1
blastp_uniprot_sprot sp|O18017|BLM_CAEEL 363 1020 + 658 Gaps:50 65.59 988 40.43 1e-130 Bloom syndrome protein homolog OS Caenorhabditis elegans GN him-6 PE 2 SV 2
blastp_uniprot_sprot sp|Q9Z129|RECQ1_MOUSE 337 941 + 605 Gaps:56 88.43 648 40.84 6e-130 ATP-dependent DNA helicase Q1 OS Mus musculus GN Recql PE 1 SV 2

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 611 692 82 SM00490 none helicase superfamily c-terminal domain IPR001650
Gene3D 358 565 208 G3DSA:3.40.50.300 none none IPR027417
PANTHER 917 1125 209 PTHR13710 none none none
PANTHER 354 894 541 PTHR13710 none none none
PANTHER 6 24 19 PTHR13710 none none none
ProSiteProfiles 946 1028 83 PS50967 none HRDC domain profile. IPR002121
Gene3D 949 1023 75 G3DSA:1.10.150.80 none none IPR002121
ProSitePatterns 500 509 10 PS00690 none DEAH-box subfamily ATP-dependent helicases signature. IPR002464
Gene3D 705 907 203 G3DSA:1.10.10.10 none none IPR011991
SUPERFAMILY 949 1021 73 SSF47819 none none IPR010997
SUPERFAMILY 666 710 45 SSF52540 none none IPR027417
SUPERFAMILY 337 524 188 SSF52540 none none IPR027417
Gene3D 566 704 139 G3DSA:3.40.50.300 none none IPR027417
Pfam 616 692 77 PF00271 none Helicase conserved C-terminal domain IPR001650
Pfam 380 548 169 PF00270 none DEAD/DEAH box helicase IPR011545
ProSiteProfiles 586 747 162 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
ProSiteProfiles 386 561 176 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
Pfam 794 902 109 PF09382 none RQC domain IPR018982
SMART 374 577 204 SM00487 none DEAD-like helicases superfamily IPR014001
SMART 794 905 112 SM00956 none none IPR018982
SUPERFAMILY 567 835 269 SSF52540 none none IPR027417
TIGRFAM 370 845 476 TIGR00614 none recQ_fam: ATP-dependent DNA helicase, RecQ family IPR004589
Pfam 951 1018 68 PF00570 none HRDC domain IPR002121
PANTHER 917 1125 209 PTHR13710:SF75 none none none
PANTHER 354 894 541 PTHR13710:SF75 none none none
PANTHER 6 24 19 PTHR13710:SF75 none none none
Coils 231 259 29 Coil none none none
SMART 946 1028 83 SM00341 none Helicase and RNase D C-terminal IPR002121

0 Localization

0 Qtllist

0 Targeting