Protein : Qrob_P0018280.2 Q. robur
Protein Identifier  ? Qrob_P0018280.2 Organism . Name  Quercus robur
Score  99.1 Score Type  egn
Protein Description  (M=2) 2.1.1.35 - tRNA (uracil(54)-C(5))-methyltransferase. Code Enzyme  EC:2.1.1.35
Gene Prediction Quality  validated Protein length 

Sequence

Length: 874  
Kegg Orthology  K15332
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0008173 RNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100262197 85 873 + 789 Gaps:56 94.07 843 70.49 0.0 zinc finger CCCH domain-containing protein 24-like
blastp_kegg lcl|tcc:TCM_042040 7 873 + 867 Gaps:76 100.00 845 70.18 0.0 Zinc finger family protein isoform 1
blastp_kegg lcl|pper:PRUPE_ppa001376mg 80 873 + 794 Gaps:67 94.66 842 71.27 0.0 hypothetical protein
blastp_kegg lcl|pmum:103325204 80 873 + 794 Gaps:64 94.67 845 70.50 0.0 zinc finger CCCH domain-containing protein 24
blastp_kegg lcl|rcu:RCOM_0154700 96 873 + 778 Gaps:42 90.85 863 69.77 0.0 RNA m5u methyltransferase putative
blastp_kegg lcl|cic:CICLE_v10027798mg 17 873 + 857 Gaps:99 99.53 860 68.46 0.0 hypothetical protein
blastp_kegg lcl|cit:102606993 17 873 + 857 Gaps:99 99.53 860 68.46 0.0 zinc finger CCCH domain-containing protein 24-like
blastp_kegg lcl|pxb:103941090 7 873 + 867 Gaps:105 100.00 830 67.59 0.0 zinc finger CCCH domain-containing protein 24-like
blastp_kegg lcl|cmo:103501945 19 873 + 855 Gaps:131 99.21 887 63.64 0.0 zinc finger CCCH domain-containing protein 24
blastp_kegg lcl|fve:101314834 54 873 + 820 Gaps:93 98.31 829 67.48 0.0 zinc finger CCCH domain-containing protein 24-like
blastp_pdb 2bh2_B 576 669 + 94 none 21.71 433 30.85 2e-08 mol:protein length:433 23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA
blastp_pdb 2bh2_A 576 669 + 94 none 21.71 433 30.85 2e-08 mol:protein length:433 23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA
blastp_pdb 1uwv_A 576 669 + 94 none 21.71 433 30.85 2e-08 mol:protein length:433 23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA
blastp_uniprot_sprot sp|Q8L7S3|C3H24_ARATH 64 873 + 810 Gaps:125 97.03 809 59.87 0.0 Zinc finger CCCH domain-containing protein 24 OS Arabidopsis thaliana GN At2g28450 PE 2 SV 1
blastp_uniprot_sprot sp|Q8IZ69|TRM2A_HUMAN 314 873 + 560 Gaps:65 66.56 625 42.79 5e-48 tRNA (uracil-5-)-methyltransferase homolog A OS Homo sapiens GN TRMT2A PE 1 SV 2
blastp_uniprot_sprot sp|Q96GJ1|TRM2_HUMAN 300 873 + 574 Gaps:68 84.92 504 39.72 2e-42 tRNA (uracil(54)-C(5))-methyltransferase homolog OS Homo sapiens GN TRMT2B PE 2 SV 1
blastp_uniprot_sprot sp|Q5RFM7|TRM2_PONAB 300 873 + 574 Gaps:68 88.07 486 39.25 4e-42 tRNA (uracil(54)-C(5))-methyltransferase homolog OS Pongo abelii GN TRMT2B PE 2 SV 1
blastp_uniprot_sprot sp|Q8BQJ6|TRM2_MOUSE 316 873 + 558 Gaps:64 83.98 493 39.86 1e-41 tRNA (uracil(54)-C(5))-methyltransferase homolog OS Mus musculus GN Trmt2b PE 2 SV 1
blastp_uniprot_sprot sp|Q8BNV1|TRM2A_MOUSE 314 873 + 560 Gaps:67 66.55 574 40.31 1e-40 tRNA (uracil-5-)-methyltransferase homolog A OS Mus musculus GN Trmt2a PE 2 SV 1
blastp_uniprot_sprot sp|A4QP75|TRM2B_DANRE 316 873 + 558 Gaps:88 85.00 480 37.99 5e-30 tRNA (uracil(54)-C(5))-methyltransferase homolog-B OS Danio rerio GN trmt2b PE 2 SV 2
blastp_uniprot_sprot sp|Q74I68|Y1698_LACJO 321 679 + 359 Gaps:76 64.22 450 36.33 3e-27 Uncharacterized RNA methyltransferase LJ_1698 OS Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN LJ_1698 PE 3 SV 1
blastp_uniprot_sprot sp|Q8R918|Y1812_THETN 321 677 + 357 Gaps:79 63.72 452 37.15 9e-24 Uncharacterized RNA methyltransferase TTE1812 OS Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN TTE1812 PE 3 SV 1
blastp_uniprot_sprot sp|Q97LN4|Y523_CLOAB 321 677 + 357 Gaps:86 63.26 460 32.65 3e-22 Uncharacterized RNA methyltransferase CA_C0523 OS Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN CA_C0523 PE 3 SV 1
rpsblast_cdd gnl|CDD|32446 321 688 + 368 Gaps:81 66.44 432 35.19 8e-37 COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|129571 321 677 + 357 Gaps:68 67.52 431 30.93 2e-25 TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
rpsblast_cdd gnl|CDD|179588 582 686 + 105 Gaps:9 31.11 315 34.69 1e-11 PRK03522 rumB 23S rRNA methyluridine methyltransferase Reviewed.
rpsblast_cdd gnl|CDD|131140 582 662 + 81 none 21.66 374 37.04 3e-11 TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
rpsblast_cdd gnl|CDD|183875 542 665 + 124 Gaps:14 25.73 443 33.33 3e-09 PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase Reviewed.
rpsblast_cdd gnl|CDD|206018 608 669 + 62 Gaps:3 43.05 151 32.31 8e-09 pfam13847 Methyltransf_31 Methyltransferase domain. This family appears to be have methyltransferase activity.
rpsblast_cdd gnl|CDD|179917 759 873 + 115 Gaps:43 20.44 362 44.59 4e-08 PRK05031 PRK05031 tRNA (uracil-5-)-methyltransferase Validated.

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 377 480 104 SSF53335 none none IPR029063
SUPERFAMILY 760 873 114 SSF53335 none none IPR029063
SUPERFAMILY 553 670 118 SSF53335 none none IPR029063
SUPERFAMILY 508 516 9 SSF53335 none none IPR029063
SUPERFAMILY 319 345 27 SSF53335 none none IPR029063
Coils 327 348 22 Coil none none none
ProSitePatterns 768 800 33 PS01230 none RNA methyltransferase trmA family signature 1. IPR030390
PANTHER 756 812 57 PTHR11061:SF24 none none none
PANTHER 562 679 118 PTHR11061:SF24 none none none
ProSiteProfiles 317 873 557 PS51687 none SAM-dependent methyltransferase RNA m(5)U-type domain profile. IPR010280
Pfam 614 672 59 PF13847 none Methyltransferase domain IPR025714
Gene3D 568 670 103 G3DSA:3.40.50.150 none none IPR029063
Gene3D 848 873 26 G3DSA:3.40.50.150 none none IPR029063
Gene3D 757 812 56 G3DSA:3.40.50.150 none none IPR029063
PANTHER 838 873 36 PTHR11061:SF24 none none none
Gene3D 95 131 37 G3DSA:4.10.1000.10 none none IPR000571
PANTHER 756 812 57 PTHR11061 none none none
PANTHER 838 873 36 PTHR11061 none none none
Pfam 756 808 53 PF05958 none tRNA (Uracil-5-)-methyltransferase IPR010280
PANTHER 311 546 236 PTHR11061:SF24 none none none
ProSiteProfiles 97 126 30 PS50103 none Zinc finger C3H1-type profile. IPR000571
PANTHER 311 546 236 PTHR11061 none none none
PANTHER 562 679 118 PTHR11061 none none none
Pfam 98 125 28 PF00642 none Zinc finger C-x8-C-x5-C-x3-H type (and similar) IPR000571
SUPERFAMILY 95 130 36 SSF90229 none none none
SMART 97 125 29 SM00356 none zinc finger IPR000571

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting