Protein : Qrob_P0017200.2 Q. robur
Protein Identifier  ? Qrob_P0017200.2 Organism . Name  Quercus robur
Score  92.1 Score Type  egn
Protein Description  (M=8) K11252 - histone H2B Gene Prediction Quality  validated
Protein length 

Sequence

Length: 138  
Kegg Orthology  K11252
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_4g063240 1 137 + 137 Gaps:14 100.00 147 85.71 1e-76 Histone H2B
blastp_kegg lcl|rcu:RCOM_0350190 1 137 + 137 Gaps:6 100.00 141 89.36 1e-76 histone h2b putative
blastp_kegg lcl|rcu:RCOM_0350180 1 137 + 137 Gaps:6 100.00 141 88.65 4e-76 histone h2b putative
blastp_kegg lcl|rcu:RCOM_0272700 1 137 + 137 Gaps:2 100.00 135 92.59 7e-76 histone h2b putative
blastp_kegg lcl|pop:POPTR_0005s14680g 1 137 + 137 Gaps:11 100.00 148 85.81 9e-74 histone H2B family protein
blastp_kegg lcl|mtr:MTR_4g063200 1 137 + 137 Gaps:13 100.00 148 86.49 2e-73 Histone H2B
blastp_kegg lcl|mtr:MTR_4g063220 1 137 + 137 Gaps:13 100.00 148 86.49 2e-73 Histone H2B
blastp_kegg lcl|pop:POPTR_0010s23730g 1 137 + 137 Gaps:20 100.00 151 83.44 4e-73 hypothetical protein
blastp_kegg lcl|pxb:103944955 1 137 + 137 Gaps:8 100.00 141 90.07 8e-73 histone H2B-like
blastp_kegg lcl|mdm:103447728 1 137 + 137 Gaps:8 100.00 141 90.07 8e-73 histone H2B-like
blastp_pdb 1id3_H 5 137 + 133 Gaps:8 96.15 130 72.80 2e-57 mol:protein length:130 HISTONE H2B.2
blastp_pdb 1id3_D 5 137 + 133 Gaps:8 96.15 130 72.80 2e-57 mol:protein length:130 HISTONE H2B.2
blastp_pdb 3c9k_F 10 137 + 128 Gaps:10 97.60 125 74.59 7e-55 mol:protein length:125 Histone H2B 7
blastp_pdb 3c9k_B 10 137 + 128 Gaps:10 97.60 125 74.59 7e-55 mol:protein length:125 Histone H2B 7
blastp_pdb 3azn_H 10 137 + 128 Gaps:10 94.57 129 73.77 2e-54 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azn_D 10 137 + 128 Gaps:10 94.57 129 73.77 2e-54 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azm_H 10 137 + 128 Gaps:10 94.57 129 73.77 2e-54 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azm_D 10 137 + 128 Gaps:10 94.57 129 73.77 2e-54 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azl_H 10 137 + 128 Gaps:10 94.57 129 73.77 2e-54 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azl_D 10 137 + 128 Gaps:10 94.57 129 73.77 2e-54 mol:protein length:129 Histone H2B type 1-J
blastp_uniprot_sprot sp|P93354|H2B_TOBAC 1 137 + 137 Gaps:13 100.00 146 81.51 6e-73 Histone H2B OS Nicotiana tabacum GN HIS2B PE 2 SV 3
blastp_uniprot_sprot sp|Q1S9I9|H2B1_MEDTR 1 137 + 137 Gaps:13 100.00 148 85.14 7e-73 Probable histone H2B.1 OS Medicago truncatula PE 1 SV 3
blastp_uniprot_sprot sp|O22582|H2B_GOSHI 11 137 + 127 Gaps:1 85.71 147 93.65 1e-72 Histone H2B OS Gossypium hirsutum GN HIS2B PE 2 SV 3
blastp_uniprot_sprot sp|O23629|H2B6_ARATH 1 137 + 137 Gaps:17 100.00 150 83.33 3e-72 Histone H2B.6 OS Arabidopsis thaliana GN H2B PE 1 SV 3
blastp_uniprot_sprot sp|Q9LZT0|H2B7_ARATH 7 137 + 131 Gaps:2 88.97 145 91.47 5e-72 Histone H2B.7 OS Arabidopsis thaliana GN At3g46030 PE 1 SV 3
blastp_uniprot_sprot sp|Q1SWQ1|H2B2_MEDTR 1 137 + 137 Gaps:13 100.00 148 83.78 2e-71 Probable histone H2B.2 OS Medicago truncatula PE 3 SV 3
blastp_uniprot_sprot sp|P40283|H2B11_ARATH 7 137 + 131 Gaps:2 86.00 150 89.92 1e-70 Histone H2B.11 OS Arabidopsis thaliana GN At5g59910 PE 1 SV 5
blastp_uniprot_sprot sp|Q9ZUS0|H2B4_ARATH 1 136 + 136 Gaps:8 100.00 138 84.78 6e-70 Histone H2B.4 OS Arabidopsis thaliana GN At2g37470 PE 1 SV 3
blastp_uniprot_sprot sp|O65819|H2B3_SOLLC 4 137 + 134 Gaps:4 96.35 137 90.15 6e-70 Histone H2B.3 (Fragment) OS Solanum lycopersicum GN H2B-3 PE 2 SV 1
blastp_uniprot_sprot sp|O49118|H2B_CAPAN 1 137 + 137 Gaps:14 100.00 145 83.45 2e-69 Histone H2B OS Capsicum annuum GN HIS2B PE 2 SV 3

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 137 136 PTHR23428 none none IPR000558
Pfam 48 113 66 PF00125 none Core histone H2A/H2B/H3/H4 IPR007125
SUPERFAMILY 21 137 117 SSF47113 none none IPR009072
ProSitePatterns 105 127 23 PS00357 none Histone H2B signature. IPR000558
Gene3D 18 137 120 G3DSA:1.10.20.10 none none IPR009072
SMART 40 136 97 SM00427 none Histone H2B IPR000558
PRINTS 69 89 21 PR00621 none Histone H2B signature IPR000558
PRINTS 121 134 14 PR00621 none Histone H2B signature IPR000558
PRINTS 50 68 19 PR00621 none Histone H2B signature IPR000558
PRINTS 108 121 14 PR00621 none Histone H2B signature IPR000558
PRINTS 91 108 18 PR00621 none Histone H2B signature IPR000558

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting