Protein : Qrob_P0007990.2 Q. robur
Protein Identifier  ? Qrob_P0007990.2 Organism . Name  Quercus robur
Score  93.2 Score Type  egn
Protein Description  (M=2) K00558 - DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] Code Enzyme  EC:2.1.1.37
Gene Prediction Quality  validated Protein length 

Sequence

Length: 930  
Kegg Orthology  K00558
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003682 chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
GO:0008168 methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
GO:0006306 DNA methylation The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_040279 1 929 + 929 Gaps:39 100.00 930 63.55 0.0 Chromomethylase 1 putative isoform 1
blastp_kegg lcl|cmo:103492483 60 929 + 870 Gaps:43 99.77 859 68.03 0.0 DNA (cytosine-5)-methyltransferase CMT3
blastp_kegg lcl|pvu:PHAVU_004G176100g 101 928 + 828 Gaps:24 95.78 877 65.71 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10014232mg 95 927 + 833 Gaps:55 99.65 869 65.82 0.0 hypothetical protein
blastp_kegg lcl|gmx:100799480 95 929 + 835 Gaps:29 96.23 875 66.27 0.0 DNA (cytosine-5)-methyltransferase CMT3-like
blastp_kegg lcl|cit:102618592 95 927 + 833 Gaps:55 99.65 869 65.82 0.0 DNA (cytosine-5)-methyltransferase CMT3-like
blastp_kegg lcl|pmum:103325919 84 929 + 846 Gaps:48 99.65 869 64.32 0.0 DNA (cytosine-5)-methyltransferase CMT3
blastp_kegg lcl|cam:101514652 136 929 + 794 Gaps:29 92.48 864 68.09 0.0 DNA (cytosine-5)-methyltransferase CMT3-like
blastp_kegg lcl|csv:101218956 118 929 + 812 Gaps:21 95.09 855 68.39 0.0 DNA (cytosine-5)-methyltransferase CMT3-like
blastp_kegg lcl|vvi:100258788 126 929 + 804 Gaps:65 84.83 956 65.72 0.0 DNA (cytosine-5)-methyltransferase CMT3-like
blastp_pdb 3pta_A 513 889 + 377 Gaps:54 41.32 956 32.41 9e-50 mol:protein length:956 DNA (cytosine-5)-methyltransferase 1
blastp_pdb 3swr_A 513 889 + 377 Gaps:54 39.42 1002 32.41 1e-49 mol:protein length:1002 DNA (cytosine-5)-methyltransferase 1
blastp_pdb 4da4_B 520 889 + 370 Gaps:54 44.22 873 33.16 2e-49 mol:protein length:873 DNA (cytosine-5)-methyltransferase 1
blastp_pdb 4da4_A 520 889 + 370 Gaps:54 44.22 873 33.16 2e-49 mol:protein length:873 DNA (cytosine-5)-methyltransferase 1
blastp_pdb 3pt9_A 520 889 + 370 Gaps:54 44.22 873 33.16 2e-49 mol:protein length:873 DNA (cytosine-5)-methyltransferase 1
blastp_pdb 3av6_A 520 889 + 370 Gaps:58 29.02 1330 33.42 2e-49 mol:protein length:1330 DNA (cytosine-5)-methyltransferase 1
blastp_pdb 3av5_A 520 889 + 370 Gaps:58 29.02 1330 33.42 2e-49 mol:protein length:1330 DNA (cytosine-5)-methyltransferase 1
blastp_pdb 3av4_A 520 889 + 370 Gaps:58 29.02 1330 33.42 2e-49 mol:protein length:1330 DNA (cytosine-5)-methyltransferase 1
blastp_pdb 3pt6_B 520 889 + 370 Gaps:58 40.46 954 33.42 2e-49 mol:protein length:954 DNA (cytosine-5)-methyltransferase 1
blastp_pdb 3pt6_A 520 889 + 370 Gaps:58 40.46 954 33.42 2e-49 mol:protein length:954 DNA (cytosine-5)-methyltransferase 1
blastp_uniprot_sprot sp|Q94F88|CMT3_ARATH 83 913 + 831 Gaps:48 98.09 839 57.23 0.0 DNA (cytosine-5)-methyltransferase CMT3 OS Arabidopsis thaliana GN CMT3 PE 1 SV 2
blastp_uniprot_sprot sp|Q9AXT8|CMT1_MAIZE 145 924 + 780 Gaps:43 83.44 912 57.29 0.0 DNA (cytosine-5)-methyltransferase 1 OS Zea mays GN MET2A PE 1 SV 1
blastp_uniprot_sprot sp|Q8LPU5|CMT3_MAIZE 130 917 + 788 Gaps:43 83.83 915 57.24 0.0 DNA (cytosine-5)-methyltransferase 3 OS Zea mays GN DMT105 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ARI6|CMT2_MAIZE 130 925 + 796 Gaps:45 84.92 915 56.76 0.0 DNA (cytosine-5)-methyltransferase 2 OS Zea mays GN ZMET5 PE 2 SV 1
blastp_uniprot_sprot sp|O49139|CMT1_ARATH 130 914 + 785 Gaps:46 98.48 791 52.37 0.0 Putative DNA (cytosine-5)-methyltransferase CMT1 OS Arabidopsis thaliana GN CMT1 PE 5 SV 2
blastp_uniprot_sprot sp|Q94F87|CMT2_ARATH 145 915 + 771 Gaps:32 58.76 1295 52.30 0.0 DNA (cytosine-5)-methyltransferase CMT2 OS Arabidopsis thaliana GN CMT2 PE 2 SV 3
blastp_uniprot_sprot sp|Q7Y1I7|DNM1A_ORYSJ 527 896 + 370 Gaps:42 22.53 1527 36.63 3e-55 DNA (cytosine-5)-methyltransferase 1A OS Oryza sativa subsp. japonica GN MET1A PE 2 SV 1
blastp_uniprot_sprot sp|P34881|DNMT1_ARATH 528 897 + 370 Gaps:38 22.43 1534 38.66 3e-53 DNA (cytosine-5)-methyltransferase 1 OS Arabidopsis thaliana GN DMT1 PE 1 SV 1
blastp_uniprot_sprot sp|B1Q3J6|DNM1B_ORYSJ 236 895 + 660 Gaps:65 33.22 1529 33.07 4e-53 DNA (cytosine-5)-methyltransferase 1B OS Oryza sativa subsp. japonica GN MET1B PE 2 SV 1
blastp_uniprot_sprot sp|Q27746|DNMT1_PARLI 529 911 + 383 Gaps:47 24.81 1612 31.75 2e-50 DNA (cytosine-5)-methyltransferase PliMCI OS Paracentrotus lividus GN DNMT PE 2 SV 1

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 128 422 295 PTHR10629:SF28 none none none
PANTHER 73 112 40 PTHR10629:SF28 none none none
Pfam 209 312 104 PF01426 none BAH domain IPR001025
Pfam 466 520 55 PF00385 none Chromo (CHRromatin Organisation MOdifier) domain IPR023780
SMART 195 312 118 SM00439 none Bromo adjacent homology domain IPR001025
ProSiteProfiles 351 899 549 PS51679 "KEGG:00270+2.1.1.37" C-5 cytosine-specific DNA methylase (Dnmt) domain profile. IPR001525
SMART 465 524 60 SM00298 none Chromatin organization modifier domain IPR000953
Gene3D 460 520 61 G3DSA:2.40.50.40 none none none
ProSitePatterns 536 548 13 PS00094 "KEGG:00270+2.1.1.37" C-5 cytosine-specific DNA methylases active site. IPR018117
ProSiteProfiles 466 519 54 PS50013 none Chromo and chromo shadow domain profile. IPR000953
Pfam 530 892 363 PF00145 none C-5 cytosine-specific DNA methylase none
Gene3D 833 880 48 G3DSA:3.90.120.10 none none none
SUPERFAMILY 808 892 85 SSF53335 none none IPR029063
SUPERFAMILY 511 703 193 SSF53335 none none IPR029063
SUPERFAMILY 352 402 51 SSF53335 none none IPR029063
SUPERFAMILY 738 770 33 SSF53335 none none IPR029063
ProSiteProfiles 195 312 118 PS51038 none BAH domain profile. IPR001025
PANTHER 128 422 295 PTHR10629 none none none
PANTHER 516 916 401 PTHR10629 none none none
PANTHER 73 112 40 PTHR10629 none none none
ProSitePatterns 489 509 21 PS00598 none Chromo domain signature. IPR023779
Gene3D 521 716 196 G3DSA:3.40.50.150 none none IPR029063
Gene3D 345 407 63 G3DSA:3.40.50.150 none none IPR029063
PRINTS 579 593 15 PR00105 "KEGG:00270+2.1.1.37" Cytosine-specific DNA methyltransferase signature IPR001525
PRINTS 352 368 17 PR00105 "KEGG:00270+2.1.1.37" Cytosine-specific DNA methyltransferase signature IPR001525
PRINTS 625 638 14 PR00105 "KEGG:00270+2.1.1.37" Cytosine-specific DNA methyltransferase signature IPR001525
Coils 87 115 29 Coil none none none
SUPERFAMILY 454 527 74 SSF54160 none none IPR016197
PANTHER 516 916 401 PTHR10629:SF28 none none none
TIGRFAM 534 889 356 TIGR00675 "KEGG:00270+2.1.1.37" dcm: DNA (cytosine-5-)-methyltransferase IPR001525

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 10 9

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting