Protein : Qrob_P0007880.2 Q. robur
Protein Identifier  ? Qrob_P0007880.2 Organism . Name  Quercus robur
Score  95.0 Score Type  egn
Protein Description  (M=3) K03120 - transcription initiation factor TFIID TATA-box-binding protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 226  
Kegg Orthology  K03120
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006352 DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sita:101756873 1 222 + 222 Gaps:7 97.45 235 88.65 5e-140 TATA-box-binding protein 2-like
blastp_kegg lcl|pda:103718362 1 221 + 221 Gaps:19 90.18 224 97.52 5e-139 TATA-box-binding protein
blastp_kegg lcl|cam:101507215 1 221 + 221 Gaps:19 96.65 209 97.52 8e-139 TATA-box-binding protein-like
blastp_kegg lcl|cmo:103492411 1 219 + 219 Gaps:19 100.00 200 98.00 1e-137 TATA-box-binding protein
blastp_kegg lcl|csv:101216807 1 219 + 219 Gaps:19 100.00 200 98.00 1e-137 TATA-box-binding protein-like
blastp_kegg lcl|sot:102583666 1 219 + 219 Gaps:19 100.00 200 97.50 2e-137 TBP TFIID TATA-box-binding protein-like
blastp_kegg lcl|sly:101254627 1 219 + 219 Gaps:19 100.00 200 97.50 2e-137 TATA-box-binding protein-like
blastp_kegg lcl|gmx:547805 1 219 + 219 Gaps:19 100.00 200 97.50 3e-137 TBP1 STBP1 TBP TATA-box binding protein
blastp_kegg lcl|cit:102614840 1 221 + 221 Gaps:20 91.86 221 97.04 4e-137 TATA-box-binding protein-like
blastp_kegg lcl|gmx:100790566 1 221 + 221 Gaps:19 73.99 273 97.03 5e-137 TATA-box-binding protein-like
blastp_pdb 1vol_B 1 219 + 219 Gaps:19 100.00 200 92.00 2e-130 mol:protein length:200 PROTEIN (TATA BINDING PROTEIN (TBP))
blastp_pdb 1vok_B 1 219 + 219 Gaps:19 100.00 200 92.00 2e-130 mol:protein length:200 TATA-BOX-BINDING PROTEIN
blastp_pdb 1vok_A 1 219 + 219 Gaps:19 100.00 200 92.00 2e-130 mol:protein length:200 TATA-BOX-BINDING PROTEIN
blastp_pdb 1qne_B 1 219 + 219 Gaps:19 100.00 200 92.00 2e-130 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_pdb 1qne_A 1 219 + 219 Gaps:19 100.00 200 92.00 2e-130 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_pdb 1qnc_B 1 219 + 219 Gaps:19 100.00 200 92.00 2e-130 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_pdb 1qnc_A 1 219 + 219 Gaps:19 100.00 200 92.00 2e-130 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_pdb 1qnb_B 1 219 + 219 Gaps:19 100.00 200 92.00 2e-130 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_pdb 1qnb_A 1 219 + 219 Gaps:19 100.00 200 92.00 2e-130 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_pdb 1qna_B 1 219 + 219 Gaps:19 100.00 200 92.00 2e-130 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_uniprot_sprot sp|P26357|TBP_SOLTU 1 219 + 219 Gaps:19 100.00 200 97.50 9e-139 TATA-box-binding protein OS Solanum tuberosum GN TBP PE 2 SV 1
blastp_uniprot_sprot sp|Q42808|TBP_SOYBN 1 219 + 219 Gaps:19 100.00 200 97.50 1e-138 TATA-box-binding protein OS Glycine max GN TBP1 PE 2 SV 1
blastp_uniprot_sprot sp|P48511|TBP_MESCR 1 219 + 219 Gaps:19 100.00 200 98.00 8e-138 TATA-box-binding protein OS Mesembryanthemum crystallinum PE 2 SV 1
blastp_uniprot_sprot sp|P93348|TBP_TOBAC 1 219 + 219 Gaps:19 100.00 200 97.00 2e-136 TATA-box-binding protein OS Nicotiana tabacum PE 2 SV 1
blastp_uniprot_sprot sp|P50159|TBP2_MAIZE 1 219 + 219 Gaps:19 100.00 200 97.00 3e-136 TATA-box-binding protein 2 OS Zea mays GN TBP2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8W0W4|TBP2_ORYSJ 2 219 + 218 Gaps:19 98.03 203 96.98 4e-135 TATA-binding protein 2 OS Oryza sativa subsp. japonica GN TBP2 PE 1 SV 2
blastp_uniprot_sprot sp|P50158|TBP1_MAIZE 1 219 + 219 Gaps:19 100.00 200 96.50 5e-135 TATA-box-binding protein 1 OS Zea mays GN TBP1 PE 2 SV 1
blastp_uniprot_sprot sp|Q02879|TBP2_WHEAT 1 219 + 219 Gaps:20 100.00 201 95.02 1e-132 TATA-box-binding protein 2 OS Triticum aestivum GN TBP2 PE 2 SV 1
blastp_uniprot_sprot sp|P28148|TBP2_ARATH 1 219 + 219 Gaps:19 100.00 200 93.00 9e-131 TATA-box-binding protein 2 OS Arabidopsis thaliana GN TBP2 PE 1 SV 1
blastp_uniprot_sprot sp|P28147|TBP1_ARATH 1 219 + 219 Gaps:19 100.00 200 92.00 8e-130 TATA-box-binding protein 1 OS Arabidopsis thaliana GN TBP1 PE 1 SV 1

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Hamap 19 198 180 MF_00408 none TATA-box-binding protein [tbp]. IPR000814
Phobius 1 159 159 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 112 217 106 SSF55945 none none none
Phobius 160 182 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 9 175 167 PTHR10126 none none IPR000814
PANTHER 195 216 22 PTHR10126 none none IPR000814
PRINTS 139 154 16 PR00686 none Transcription initiation factor TFIID signature IPR000814
PRINTS 115 131 17 PR00686 none Transcription initiation factor TFIID signature IPR000814
PRINTS 25 40 16 PR00686 none Transcription initiation factor TFIID signature IPR000814
PRINTS 49 68 20 PR00686 none Transcription initiation factor TFIID signature IPR000814
PRINTS 68 86 19 PR00686 none Transcription initiation factor TFIID signature IPR000814
PRINTS 158 174 17 PR00686 none Transcription initiation factor TFIID signature IPR000814
ProSitePatterns 52 101 50 PS00351 none Transcription factor TFIID repeat signature. IPR030491
SUPERFAMILY 22 114 93 SSF55945 none none none
Phobius 183 225 43 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 107 177 71 G3DSA:3.30.310.10 none none IPR012295
Gene3D 21 105 85 G3DSA:3.30.310.10 none none IPR012295
Pfam 23 105 83 PF00352 none Transcription factor TFIID (or TATA-binding protein, TBP) IPR000814
Pfam 110 177 68 PF00352 none Transcription factor TFIID (or TATA-binding protein, TBP) IPR000814

1 Localization

Analysis Start End Length
TMHMM 161 183 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting