Protein : Qrob_P0007830.2 Q. robur
Protein Identifier  ? Qrob_P0007830.2 Organism . Name  Quercus robur
Score  15.0 Score Type  egn
Protein Description  (M=1) KOG0444//KOG0472//KOG0532//KOG0617//KOG0618//KOG3302//KOG4658 - Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]. // Leucine-rich repeat protein [Function unknown]. // Leucine-rich repeat (LRR) protein contains calponin homology domain [Cytoskeleton]. // Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]. // Serine/threonine phosphatase 2C containing leucine-rich repeats similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]. // TATA-box binding protein (TBP) component of TFIID and TFIIIB [Transcription]. // Apoptotic ATPase [Signal transduction mechanisms]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1137  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0043531 ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
GO:0006352 DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.

47 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103935009 1 878 + 878 Gaps:144 76.67 1239 42.21 2e-178 TMV resistance protein N-like
blastp_kegg lcl|mdm:103413472 1 878 + 878 Gaps:149 74.61 1272 43.10 1e-177 TMV resistance protein N-like
blastp_kegg lcl|fve:101295181 7 922 + 916 Gaps:113 81.39 1166 40.99 7e-174 TMV resistance protein N-like
blastp_kegg lcl|pper:PRUPE_ppa022091mg 1 917 + 917 Gaps:161 80.54 1105 44.16 9e-172 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0458060 33 882 + 850 Gaps:99 88.55 943 42.99 2e-171 leucine-rich repeat-containing protein putative
blastp_kegg lcl|pxb:103956600 1 883 + 883 Gaps:185 69.00 1645 37.80 2e-164 TMV resistance protein N-like
blastp_kegg lcl|pmum:103336332 1 885 + 885 Gaps:111 80.50 1123 39.27 4e-164 TMV resistance protein N-like
blastp_kegg lcl|cic:CICLE_v10023905mg 52 925 + 874 Gaps:148 98.22 898 40.14 1e-162 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa023967mg 1 893 + 893 Gaps:99 78.98 1142 41.80 2e-162 hypothetical protein
blastp_kegg lcl|mdm:103402160 33 882 + 850 Gaps:103 77.46 1127 39.98 4e-162 HD8 TMV resistance protein N-like
blastp_pdb 1vto_B 920 1113 + 194 Gaps:27 96.32 190 85.25 6e-93 mol:protein length:190 TATA BINDING PROTEIN
blastp_pdb 1vto_A 920 1113 + 194 Gaps:27 96.32 190 85.25 6e-93 mol:protein length:190 TATA BINDING PROTEIN
blastp_pdb 1vol_B 920 1113 + 194 Gaps:27 91.50 200 85.25 7e-93 mol:protein length:200 PROTEIN (TATA BINDING PROTEIN (TBP))
blastp_pdb 1vok_B 920 1113 + 194 Gaps:27 91.50 200 85.25 7e-93 mol:protein length:200 TATA-BOX-BINDING PROTEIN
blastp_pdb 1vok_A 920 1113 + 194 Gaps:27 91.50 200 85.25 7e-93 mol:protein length:200 TATA-BOX-BINDING PROTEIN
blastp_pdb 1qne_B 920 1113 + 194 Gaps:27 91.50 200 85.25 7e-93 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_pdb 1qne_A 920 1113 + 194 Gaps:27 91.50 200 85.25 7e-93 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_pdb 1qnc_B 920 1113 + 194 Gaps:27 91.50 200 85.25 7e-93 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_pdb 1qnc_A 920 1113 + 194 Gaps:27 91.50 200 85.25 7e-93 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_pdb 1qnb_B 920 1113 + 194 Gaps:27 91.50 200 85.25 7e-93 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_uniprot_sprot sp|Q40392|TMVRN_NICGU 7 767 + 761 Gaps:135 71.50 1144 34.60 2e-99 TMV resistance protein N OS Nicotiana glutinosa GN N PE 1 SV 1
blastp_uniprot_sprot sp|P48511|TBP_MESCR 920 1113 + 194 Gaps:27 91.50 200 89.62 4e-98 TATA-box-binding protein OS Mesembryanthemum crystallinum PE 2 SV 1
blastp_uniprot_sprot sp|P26357|TBP_SOLTU 920 1113 + 194 Gaps:27 91.50 200 89.07 5e-98 TATA-box-binding protein OS Solanum tuberosum GN TBP PE 2 SV 1
blastp_uniprot_sprot sp|Q42808|TBP_SOYBN 920 1113 + 194 Gaps:27 91.50 200 89.07 2e-97 TATA-box-binding protein OS Glycine max GN TBP1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8W0W4|TBP2_ORYSJ 920 1113 + 194 Gaps:27 90.15 203 89.62 3e-97 TATA-binding protein 2 OS Oryza sativa subsp. japonica GN TBP2 PE 1 SV 2
blastp_uniprot_sprot sp|P93348|TBP_TOBAC 920 1113 + 194 Gaps:27 91.50 200 89.07 1e-96 TATA-box-binding protein OS Nicotiana tabacum PE 2 SV 1
blastp_uniprot_sprot sp|P50158|TBP1_MAIZE 920 1113 + 194 Gaps:27 91.50 200 88.52 2e-96 TATA-box-binding protein 1 OS Zea mays GN TBP1 PE 2 SV 1
blastp_uniprot_sprot sp|P50159|TBP2_MAIZE 920 1113 + 194 Gaps:27 91.50 200 88.52 3e-96 TATA-box-binding protein 2 OS Zea mays GN TBP2 PE 2 SV 1
blastp_uniprot_sprot sp|Q02879|TBP2_WHEAT 920 1113 + 194 Gaps:27 91.04 201 87.43 1e-95 TATA-box-binding protein 2 OS Triticum aestivum GN TBP2 PE 2 SV 1
blastp_uniprot_sprot sp|P28148|TBP2_ARATH 920 1113 + 194 Gaps:27 91.50 200 85.79 9e-93 TATA-box-binding protein 2 OS Arabidopsis thaliana GN TBP2 PE 1 SV 1

32 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1077 1111 35 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 932 1009 78 G3DSA:3.30.310.10 none none IPR012295
Pfam 419 437 19 PF07725 none Leucine Rich Repeat IPR011713
Pfam 570 614 45 PF13855 none Leucine rich repeat IPR001611
Phobius 1054 1076 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 13 263 251 PF00931 none NB-ARC domain IPR002182
SUPERFAMILY 1014 1110 97 SSF55945 none none none
Phobius 1 754 754 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 601 624 24 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 487 511 25 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 578 600 23 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
Pfam 489 511 23 PF00560 none Leucine Rich Repeat IPR001611
PRINTS 951 970 20 PR00686 none Transcription initiation factor TFIID signature IPR000814
PRINTS 927 942 16 PR00686 none Transcription initiation factor TFIID signature IPR000814
PRINTS 1017 1033 17 PR00686 none Transcription initiation factor TFIID signature IPR000814
PRINTS 970 988 19 PR00686 none Transcription initiation factor TFIID signature IPR000814
Gene3D 358 674 317 G3DSA:3.80.10.10 none none none
PANTHER 1091 1110 20 PTHR10126 none none IPR000814
PANTHER 928 1071 144 PTHR10126 none none IPR000814
Phobius 774 1053 280 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 2 251 250 SSF52540 none none IPR027417
Pfam 1012 1071 60 PF00352 none Transcription factor TFIID (or TATA-binding protein, TBP) IPR000814
Pfam 928 1007 80 PF00352 none Transcription factor TFIID (or TATA-binding protein, TBP) IPR000814
Phobius 1130 1136 7 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1112 1129 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 19 173 155 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 926 1017 92 SSF55945 none none none
Gene3D 1010 1071 62 G3DSA:3.30.310.10 none none IPR012295
ProSitePatterns 954 1003 50 PS00351 none Transcription factor TFIID repeat signature. IPR030491
Phobius 755 773 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 1055 1077 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting