Protein : Qrob_P0007800.2 Q. robur
Protein Identifier  ? Qrob_P0007800.2 Organism . Name  Quercus robur
Score  29.0 Score Type  egn
Protein Description  (M=3) K03120 - transcription initiation factor TFIID TATA-box-binding protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 168  
Kegg Orthology  K03120
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006352 DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pda:103718362 19 163 + 145 Gaps:31 78.57 224 78.41 3e-87 TATA-box-binding protein
blastp_kegg lcl|cam:101507215 19 163 + 145 Gaps:31 84.21 209 77.84 4e-86 TATA-box-binding protein-like
blastp_kegg lcl|cit:102614840 19 163 + 145 Gaps:31 79.64 221 77.27 9e-86 TATA-box-binding protein-like
blastp_kegg lcl|sot:102583666 19 161 + 143 Gaps:31 87.00 200 78.16 1e-85 TBP TFIID TATA-box-binding protein-like
blastp_kegg lcl|sly:101254627 19 161 + 143 Gaps:31 87.00 200 78.16 1e-85 TATA-box-binding protein-like
blastp_kegg lcl|pvu:PHAVU_010G081500g 19 161 + 143 Gaps:31 87.00 200 78.16 2e-85 hypothetical protein
blastp_kegg lcl|cmo:103492411 19 161 + 143 Gaps:31 87.00 200 78.16 3e-85 TATA-box-binding protein
blastp_kegg lcl|csv:101216807 19 161 + 143 Gaps:31 87.00 200 78.16 3e-85 TATA-box-binding protein-like
blastp_kegg lcl|gmx:100790566 19 163 + 145 Gaps:31 64.47 273 77.84 3e-85 TATA-box-binding protein-like
blastp_kegg lcl|pvu:PHAVU_006G062900g 19 161 + 143 Gaps:31 87.00 200 78.16 3e-85 hypothetical protein
blastp_pdb 1vto_B 19 161 + 143 Gaps:31 91.58 190 72.99 3e-80 mol:protein length:190 TATA BINDING PROTEIN
blastp_pdb 1vto_A 19 161 + 143 Gaps:31 91.58 190 72.99 3e-80 mol:protein length:190 TATA BINDING PROTEIN
blastp_pdb 1vol_B 19 161 + 143 Gaps:31 87.00 200 72.99 4e-80 mol:protein length:200 PROTEIN (TATA BINDING PROTEIN (TBP))
blastp_pdb 1vok_B 19 161 + 143 Gaps:31 87.00 200 72.99 4e-80 mol:protein length:200 TATA-BOX-BINDING PROTEIN
blastp_pdb 1vok_A 19 161 + 143 Gaps:31 87.00 200 72.99 4e-80 mol:protein length:200 TATA-BOX-BINDING PROTEIN
blastp_pdb 1qne_B 19 161 + 143 Gaps:31 87.00 200 72.99 4e-80 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_pdb 1qne_A 19 161 + 143 Gaps:31 87.00 200 72.99 4e-80 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_pdb 1qnc_B 19 161 + 143 Gaps:31 87.00 200 72.99 4e-80 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_pdb 1qnc_A 19 161 + 143 Gaps:31 87.00 200 72.99 4e-80 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_pdb 1qnb_B 19 161 + 143 Gaps:31 87.00 200 72.99 4e-80 mol:protein length:200 TRANSCRIPTION INITIATION FACTOR TFIID-1
blastp_uniprot_sprot sp|P26357|TBP_SOLTU 19 161 + 143 Gaps:31 87.00 200 78.16 4e-87 TATA-box-binding protein OS Solanum tuberosum GN TBP PE 2 SV 1
blastp_uniprot_sprot sp|P48511|TBP_MESCR 19 161 + 143 Gaps:31 87.00 200 78.16 8e-87 TATA-box-binding protein OS Mesembryanthemum crystallinum PE 2 SV 1
blastp_uniprot_sprot sp|Q42808|TBP_SOYBN 19 161 + 143 Gaps:31 87.00 200 77.59 2e-86 TATA-box-binding protein OS Glycine max GN TBP1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8W0W4|TBP2_ORYSJ 19 161 + 143 Gaps:31 85.71 203 78.16 5e-86 TATA-binding protein 2 OS Oryza sativa subsp. japonica GN TBP2 PE 1 SV 2
blastp_uniprot_sprot sp|P93348|TBP_TOBAC 19 161 + 143 Gaps:31 87.00 200 77.59 3e-85 TATA-box-binding protein OS Nicotiana tabacum PE 2 SV 1
blastp_uniprot_sprot sp|P50159|TBP2_MAIZE 19 161 + 143 Gaps:31 87.00 200 77.01 6e-85 TATA-box-binding protein 2 OS Zea mays GN TBP2 PE 2 SV 1
blastp_uniprot_sprot sp|Q02879|TBP2_WHEAT 19 161 + 143 Gaps:31 86.57 201 76.44 1e-84 TATA-box-binding protein 2 OS Triticum aestivum GN TBP2 PE 2 SV 1
blastp_uniprot_sprot sp|P50158|TBP1_MAIZE 19 161 + 143 Gaps:31 87.00 200 77.01 1e-84 TATA-box-binding protein 1 OS Zea mays GN TBP1 PE 2 SV 1
blastp_uniprot_sprot sp|P26356|TBP1_WHEAT 14 161 + 148 Gaps:31 76.82 233 70.95 1e-80 TATA-box-binding protein 1 OS Triticum aestivum GN TBP1 PE 2 SV 1
blastp_uniprot_sprot sp|P28148|TBP2_ARATH 19 161 + 143 Gaps:31 87.00 200 73.56 3e-80 TATA-box-binding protein 2 OS Arabidopsis thaliana GN TBP2 PE 1 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 19 158 140 PTHR10126 none none IPR000814
Gene3D 22 99 78 G3DSA:3.30.310.10 none none IPR012295
Gene3D 102 159 58 G3DSA:3.30.310.10 none none IPR012295
PRINTS 41 60 20 PR00686 none Transcription initiation factor TFIID signature IPR000814
PRINTS 60 78 19 PR00686 none Transcription initiation factor TFIID signature IPR000814
PRINTS 17 32 16 PR00686 none Transcription initiation factor TFIID signature IPR000814
SUPERFAMILY 16 102 87 SSF55945 none none none
Pfam 102 156 55 PF00352 none Transcription factor TFIID (or TATA-binding protein, TBP) IPR000814
Pfam 19 97 79 PF00352 none Transcription factor TFIID (or TATA-binding protein, TBP) IPR000814
SUPERFAMILY 103 161 59 SSF55945 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 23   Secretory pathway 5 0.744 0.015 NON-PLANT 23