Protein : Qrob_P0006180.2 Q. robur
Protein Identifier  ? Qrob_P0006180.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=7) PTHR13774 - PHENAZINE BIOSYNTHESIS PROTEIN Gene Prediction Quality  validated
Protein length 

Sequence

Length: 172  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0010s18320g 7 171 + 165 Gaps:39 42.57 296 72.22 1e-48 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s18340g 4 171 + 168 Gaps:39 43.73 295 69.77 2e-48 POPTRDRAFT_833728 phenazine biosynthesis PhzC/PhzF family protein
blastp_kegg lcl|rcu:RCOM_0558860 16 171 + 156 Gaps:39 23.93 489 76.92 5e-47 phenazine biosynthesis protein putative
blastp_kegg lcl|cic:CICLE_v10021404mg 16 171 + 156 Gaps:39 39.39 297 73.50 2e-46 hypothetical protein
blastp_kegg lcl|cit:102621786 16 171 + 156 Gaps:39 39.39 297 73.50 2e-46 phenazine biosynthesis-like domain-containing protein 1-like
blastp_kegg lcl|cic:CICLE_v10021390mg 16 171 + 156 Gaps:40 53.15 222 72.03 1e-45 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10024334mg 16 171 + 156 Gaps:40 44.36 266 72.88 1e-45 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10021398mg 16 171 + 156 Gaps:39 39.39 297 72.65 3e-45 hypothetical protein
blastp_kegg lcl|cit:102622577 16 171 + 156 Gaps:40 39.60 298 72.03 7e-45 phenazine biosynthesis-like domain-containing protein 1-like
blastp_kegg lcl|mtr:MTR_1g072500 14 171 + 158 Gaps:39 40.75 292 69.75 8e-45 Isomerase putative
blastp_pdb 1s7j_B 17 110 + 94 Gaps:16 30.53 262 45.00 1e-08 mol:protein length:262 phenazine biosynthesis protein PhzF family
blastp_pdb 1s7j_A 17 110 + 94 Gaps:16 30.53 262 45.00 1e-08 mol:protein length:262 phenazine biosynthesis protein PhzF family
blastp_pdb 4dun_A 14 171 + 158 Gaps:43 43.73 263 36.52 5e-08 mol:protein length:263 Putative phenazine biosynthesis PhzC/PhzF pro
blastp_uniprot_sprot sp|Q9KG32|Y283_BACHD 16 171 + 156 Gaps:42 43.02 265 41.23 3e-11 Uncharacterized isomerase BH0283 OS Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN BH0283 PE 3 SV 1
blastp_uniprot_sprot sp|Q2HJF4|PBLD_BOVIN 12 169 + 158 Gaps:47 39.93 288 40.87 2e-10 Phenazine biosynthesis-like domain-containing protein OS Bos taurus GN PBLD PE 2 SV 1
blastp_uniprot_sprot sp|Q9CXN7|PBLD2_MOUSE 9 169 + 161 Gaps:49 38.89 288 41.07 8e-10 Phenazine biosynthesis-like domain-containing protein 2 OS Mus musculus GN Pbld2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9DCG6|PBLD1_MOUSE 9 169 + 161 Gaps:49 38.89 288 43.75 2e-09 Phenazine biosynthesis-like domain-containing protein 1 OS Mus musculus GN Pbld1 PE 2 SV 2
blastp_uniprot_sprot sp|P30039|PBLD_HUMAN 36 169 + 134 Gaps:43 32.99 288 45.26 5e-09 Phenazine biosynthesis-like domain-containing protein OS Homo sapiens GN PBLD PE 1 SV 2
blastp_uniprot_sprot sp|Q5RDZ1|PBLD_PONAB 36 171 + 136 Gaps:43 33.68 288 42.27 9e-08 Phenazine biosynthesis-like domain-containing protein OS Pongo abelii GN PBLD PE 2 SV 1
blastp_uniprot_sprot sp|Q68G31|PBLD_RAT 36 169 + 134 Gaps:41 32.99 288 42.11 1e-07 Phenazine biosynthesis-like domain-containing protein OS Rattus norvegicus GN Pbld PE 2 SV 1
blastp_uniprot_sprot sp|Q9HY42|Y3578_PSEAE 10 169 + 160 Gaps:44 44.44 261 38.79 4e-07 Uncharacterized isomerase PA3578 OS Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN PA3578 PE 3 SV 1
rpsblast_cdd gnl|CDD|202288 16 167 + 152 Gaps:38 43.57 280 38.52 4e-23 pfam02567 PhzC-PhzF Phenazine biosynthesis-like protein. PhzC/PhzF is involved in dimerisation of two 2 3-dihydro-3-oxo-anthranilic acid molecules to create PCA by P. fluorescens. This family also contains an uncharacterized protein Rv2715 from Mycobacterium tuberculosis though there is no significant sequence similarity to pfam00303 members. This family appears to be distantly related to pfam01678 including containing a weak internal duplication. However members of this family do not contain the conserved cysteines that are hypothesised to be active site residues (Bateman A pers obs).
rpsblast_cdd gnl|CDD|30733 16 171 + 156 Gaps:38 43.30 291 30.95 3e-10 COG0384 COG0384 Predicted epimerase PhzC/PhzF homolog [General function prediction only].
rpsblast_kog gnl|CDD|38243 14 171 + 158 Gaps:41 43.01 286 42.28 1e-24 KOG3033 KOG3033 KOG3033 Predicted PhzC/PhzF-type epimerase [General function prediction only].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 14 69 56 G3DSA:3.10.310.10 none none none
Gene3D 83 113 31 G3DSA:3.10.310.10 none none none
PANTHER 8 102 95 PTHR13774 none none none
SUPERFAMILY 128 170 43 SSF54506 none none none
SUPERFAMILY 12 100 89 SSF54506 none none none
Phobius 93 171 79 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 130 171 42 PTHR13774 none none none
PANTHER 130 171 42 PTHR13774:SF17 none none none
Phobius 70 92 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 8 167 160 PF02567 none Phenazine biosynthesis-like protein IPR003719
Phobius 1 69 69 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 8 102 95 PTHR13774:SF17 none none none

1 Localization

Analysis Start End Length
TMHMM 70 92 22

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting