Protein : Qrob_P0006100.2 Q. robur
Protein Identifier  ? Qrob_P0006100.2 Organism . Name  Quercus robur
Score  29.0 Score Type  egn
Protein Description  (M=2) K12869 - crooked neck Gene Prediction Quality  validated
Protein length 

Sequence

Length: 318  
Kegg Orthology  K12869
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100791616 1 267 + 267 Gaps:21 62.16 695 61.57 4e-146 crooked neck-like protein 1-like
blastp_kegg lcl|pop:POPTR_0001s10340g 1 294 + 294 Gaps:99 74.09 687 66.80 5e-146 POPTRDRAFT_797324 crooked neck family protein
blastp_kegg lcl|gmx:100811745 1 285 + 285 Gaps:107 62.16 695 65.28 6e-146 crooked neck-like protein 1-like
blastp_kegg lcl|rcu:RCOM_1691080 1 267 + 267 Gaps:21 62.07 696 62.04 1e-145 crooked neck protein putative
blastp_kegg lcl|vvi:100255371 1 294 + 294 Gaps:175 75.11 703 67.23 5e-145 crooked neck-like protein 1
blastp_kegg lcl|fve:101307301 1 285 + 285 Gaps:143 60.91 706 71.86 5e-145 crooked neck-like protein 1-like
blastp_kegg lcl|tcc:TCM_016407 1 267 + 267 Gaps:86 61.63 701 68.75 7e-145 Crooked neck protein / cell cycle protein putative isoform 1
blastp_kegg lcl|crb:CARUB_v10004263mg 1 302 + 302 Gaps:134 75.74 705 65.17 1e-144 hypothetical protein
blastp_kegg lcl|cam:101507663 1 283 + 283 Gaps:107 62.16 695 65.74 1e-144 CRNKL1 crooked neck pre-mRNA splicing factor-like 1 (Drosophila)
blastp_kegg lcl|eus:EUTSA_v10027664mg 1 302 + 302 Gaps:83 75.50 706 65.48 5e-144 hypothetical protein
blastp_uniprot_sprot sp|P17886|CRN_DROME 9 262 + 254 Gaps:21 59.69 702 47.97 2e-97 Protein crooked neck OS Drosophila melanogaster GN crn PE 2 SV 2
blastp_uniprot_sprot sp|P63155|CRNL1_RAT 2 261 + 260 Gaps:55 63.91 690 52.15 3e-96 Crooked neck-like protein 1 OS Rattus norvegicus GN Crnkl1 PE 2 SV 1
blastp_uniprot_sprot sp|P63154|CRNL1_MOUSE 2 261 + 260 Gaps:55 63.91 690 52.15 3e-96 Crooked neck-like protein 1 OS Mus musculus GN Crnkl1 PE 1 SV 1
blastp_uniprot_sprot sp|Q54XP4|CRNL1_DICDI 1 262 + 262 Gaps:134 71.77 705 51.98 4e-96 Crooked neck-like protein 1 OS Dictyostelium discoideum GN crnkl1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9BZJ0|CRNL1_HUMAN 2 261 + 260 Gaps:55 52.00 848 52.15 5e-95 Crooked neck-like protein 1 OS Homo sapiens GN CRNKL1 PE 1 SV 4
blastp_uniprot_sprot sp|Q4WT84|CLF1_ASPFU 4 274 + 271 Gaps:76 63.02 676 51.64 4e-94 Pre-mRNA-splicing factor clf1 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN clf1 PE 3 SV 1
blastp_uniprot_sprot sp|Q5K654|CLF1_PARBR 4 260 + 257 Gaps:21 62.48 677 43.26 2e-92 Pre-mRNA-splicing factor CLF1 OS Paracoccidioides brasiliensis GN CLF1 PE 3 SV 1
blastp_uniprot_sprot sp|Q5BDX1|CLF1_EMENI 2 274 + 273 Gaps:97 78.01 673 43.43 5e-92 Pre-mRNA-splicing factor clf1 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN clf1 PE 3 SV 2
blastp_uniprot_sprot sp|Q527H0|CLF1_MAGO7 1 262 + 262 Gaps:80 58.03 691 45.64 4e-82 Pre-mRNA-splicing factor CLF1 OS Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN CLF1 PE 3 SV 1
blastp_uniprot_sprot sp|P0CO10|CLF1_CRYNJ 3 267 + 265 Gaps:80 61.02 726 48.76 9e-82 Pre-mRNA-splicing factor CLF1 OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN CLF1 PE 3 SV 1
rpsblast_kog gnl|CDD|37126 1 312 + 312 Gaps:245 79.62 677 68.27 1e-103 KOG1915 KOG1915 KOG1915 Cell cycle control protein (crooked neck) [Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|37258 1 259 + 259 Gaps:52 41.68 835 26.72 1e-11 KOG2047 KOG2047 KOG2047 mRNA splicing factor [RNA processing and modification].
rpsblast_kog gnl|CDD|35716 17 244 + 228 Gaps:61 30.12 913 21.82 3e-09 KOG0495 KOG0495 KOG0495 HAT repeat protein [RNA processing and modification].
rpsblast_kog gnl|CDD|36288 2 267 + 266 Gaps:59 14.33 1710 28.98 6e-09 KOG1070 KOG1070 KOG1070 rRNA processing protein Rrp5 [RNA processing and modification].

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 267 267 PTHR11246:SF3 none none none
SUPERFAMILY 53 267 215 SSF48452 none none none
Gene3D 183 245 63 G3DSA:1.25.40.10 none none IPR011990
Gene3D 3 19 17 G3DSA:1.25.40.10 none none IPR011990
Gene3D 101 134 34 G3DSA:1.25.40.10 none none IPR011990
SUPERFAMILY 2 59 58 SSF48452 none none none
PANTHER 1 267 267 PTHR11246 none none none
SMART 163 199 37 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 231 262 32 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 119 153 35 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 4 39 36 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 85 117 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 41 75 35 SM00386 none HAT (Half-A-TPR) repeats IPR003107

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting