Protein : Qrob_P0005810.2 Q. robur
Protein Identifier  ? Qrob_P0005810.2 Organism . Name  Quercus robur
Protein Description  (M=10) PTHR10641//PTHR10641:SF482 - MYB-LIKE DNA-BINDING PROTEIN MYB // SUBFAMILY NOT NAMED Alias (in v1)  Qrob_P0318410.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 217  
Kegg Orthology  K09422
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100244963 1 216 + 216 Gaps:6 100.00 216 68.52 1e-92 transcription factor WER-like
blastp_kegg lcl|pop:POPTR_0012s08190g 6 216 + 211 Gaps:2 96.76 216 63.16 5e-82 POPTRDRAFT_773013 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa010908mg 1 214 + 214 Gaps:27 96.54 231 62.78 6e-82 hypothetical protein
blastp_kegg lcl|tcc:TCM_012057 2 216 + 215 Gaps:15 97.76 223 65.14 9e-80 Myb domain protein 0
blastp_kegg lcl|pmum:103338374 1 211 + 211 Gaps:24 100.00 231 61.04 3e-79 transcription factor WER-like
blastp_kegg lcl|mdm:103455225 1 207 + 207 Gaps:26 96.19 236 60.79 2e-76 transcription factor WER-like
blastp_kegg lcl|mdm:103415238 1 211 + 211 Gaps:28 98.72 234 59.74 8e-76 transcription factor WER-like
blastp_kegg lcl|pxb:103953029 1 211 + 211 Gaps:26 98.72 234 57.58 3e-75 transcription factor WER-like
blastp_kegg lcl|pxb:103953031 1 206 + 206 Gaps:25 100.00 225 59.11 5e-75 transcription factor WER-like
blastp_kegg lcl|mdm:103437719 5 211 + 207 Gaps:21 96.49 228 60.45 1e-74 transcription factor WER-like
blastp_pdb 1h8a_C 6 111 + 106 Gaps:3 82.03 128 48.57 2e-27 mol:protein length:128 MYB TRANSFORMING PROTEIN
blastp_pdb 1a5j_A 9 111 + 103 Gaps:3 92.73 110 48.04 2e-26 mol:protein length:110 B-MYB
blastp_pdb 1gv2_A 9 111 + 103 Gaps:3 97.14 105 47.06 4e-25 mol:protein length:105 MYB PROTO-ONCOGENE PROTEIN
blastp_pdb 1msf_C 9 111 + 103 Gaps:3 97.14 105 47.06 5e-25 mol:protein length:105 C-Myb DNA-Binding Domain
blastp_pdb 1mse_C 9 111 + 103 Gaps:3 97.14 105 47.06 5e-25 mol:protein length:105 C-Myb DNA-Binding Domain
blastp_pdb 1h89_C 9 111 + 103 Gaps:3 64.15 159 47.06 1e-24 mol:protein length:159 MYB PROTO-ONCOGENE PROTEIN
blastp_pdb 1h88_C 9 111 + 103 Gaps:3 64.15 159 47.06 1e-24 mol:protein length:159 MYB PROTO-ONCOGENE PROTEIN
blastp_pdb 3zqc_J 9 112 + 104 Gaps:1 78.63 131 38.83 1e-20 mol:protein length:131 MYB3
blastp_pdb 3zqc_G 9 112 + 104 Gaps:1 78.63 131 38.83 1e-20 mol:protein length:131 MYB3
blastp_pdb 3zqc_D 9 112 + 104 Gaps:1 78.63 131 38.83 1e-20 mol:protein length:131 MYB3
blastp_uniprot_sprot sp|Q9SEI0|WER_ARATH 2 209 + 208 Gaps:17 95.07 203 60.10 3e-70 Transcription factor WER OS Arabidopsis thaliana GN WER PE 1 SV 1
blastp_uniprot_sprot sp|Q96276|MYB23_ARATH 5 209 + 205 Gaps:15 95.89 219 50.00 5e-63 Transcription factor MYB23 OS Arabidopsis thaliana GN MYB23 PE 1 SV 1
blastp_uniprot_sprot sp|Q947R4|GL1_ARALY 6 128 + 123 Gaps:8 56.95 223 71.65 1e-58 Trichome differentiation protein GL1 OS Arabidopsis lyrata GN GL1 PE 3 SV 2
blastp_uniprot_sprot sp|P27900|GL1_ARATH 6 111 + 106 none 46.49 228 79.25 7e-58 Trichome differentiation protein GL1 OS Arabidopsis thaliana GN GL1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FJA2|TT2_ARATH 4 111 + 108 none 41.86 258 65.74 1e-46 Transcription factor TT2 OS Arabidopsis thaliana GN TT2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9S9K9|MYB3_ARATH 9 111 + 103 none 40.08 257 65.05 3e-46 Transcription factor MYB3 OS Arabidopsis thaliana GN MYB3 PE 1 SV 1
blastp_uniprot_sprot sp|Q38850|MYB5_ARATH 8 156 + 149 Gaps:4 61.45 249 52.29 9e-46 Transcription repressor MYB5 OS Arabidopsis thaliana GN MYB5 PE 1 SV 1
blastp_uniprot_sprot sp|Q7XBH4|MYB4_ORYSJ 8 117 + 110 none 42.80 257 62.73 2e-45 Myb-related protein Myb4 OS Oryza sativa subsp. japonica GN MYB4 PE 2 SV 2
blastp_uniprot_sprot sp|P81393|MYB08_ANTMA 9 111 + 103 none 44.40 232 66.02 3e-45 Myb-related protein 308 OS Antirrhinum majus GN MYB308 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SZP1|MYB4_ARATH 9 111 + 103 none 36.52 282 65.05 8e-45 Transcription repressor MYB4 OS Arabidopsis thaliana GN MYB4 PE 1 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 7 103 97 SSF46689 none none IPR009057
SMART 61 109 49 SM00717 none SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains IPR001005
SMART 8 58 51 SM00717 none SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains IPR001005
Gene3D 5 59 55 G3DSA:1.10.10.60 none none IPR009057
Pfam 9 56 48 PF00249 none Myb-like DNA-binding domain IPR001005
Pfam 62 107 46 PF00249 none Myb-like DNA-binding domain IPR001005
ProSiteProfiles 4 56 53 PS51294 none Myb-type HTH DNA-binding domain profile. IPR017930
Gene3D 60 111 52 G3DSA:1.10.10.60 none none IPR009057
ProSiteProfiles 57 111 55 PS51294 none Myb-type HTH DNA-binding domain profile. IPR017930
PANTHER 4 115 112 PTHR10641:SF482 none none none
PANTHER 4 115 112 PTHR10641 none none none

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting