Protein : Qrob_P0005190.2 Q. robur
Protein Identifier  ? Qrob_P0005190.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Gene Prediction Quality  validated Protein length 

Sequence

Length: 287  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0016597 amino acid binding Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103444045 1 286 + 286 Gaps:8 100.00 294 76.53 1e-154 uncharacterized LOC103444045
blastp_kegg lcl|pxb:103945406 1 286 + 286 Gaps:10 100.00 290 77.24 2e-153 protein-coding
blastp_kegg lcl|pxb:103960243 1 286 + 286 Gaps:10 100.00 290 76.90 8e-153 protein-coding
blastp_kegg lcl|pmum:103328253 1 286 + 286 Gaps:8 100.00 294 75.17 1e-152 protein-coding
blastp_kegg lcl|fve:101291547 1 286 + 286 Gaps:13 99.32 293 78.69 2e-152 unknown protein DS12 from 2D-PAGE of leaf chloroplastic-like
blastp_kegg lcl|pxb:103955111 1 286 + 286 Gaps:8 100.00 294 75.51 8e-151 protein-coding
blastp_kegg lcl|mdm:103405528 1 286 + 286 Gaps:10 100.00 290 75.17 2e-149 uncharacterized LOC103405528
blastp_kegg lcl|cmo:103501217 1 286 + 286 Gaps:12 99.32 292 74.48 9e-148 uncharacterized LOC103501217
blastp_kegg lcl|gmx:100817063 1 286 + 286 Gaps:13 100.00 289 75.43 2e-147 uncharacterized LOC100817063
blastp_kegg lcl|csv:101215186 1 286 + 286 Gaps:12 99.32 292 74.83 2e-147 protein-coding
blastp_uniprot_sprot sp|Q0J709|UP12_ORYSJ 42 286 + 245 Gaps:5 85.51 283 76.03 6e-123 Unknown protein DS12 from 2D-PAGE of leaf chloroplastic OS Oryza sativa subsp. japonica GN Os08g0242700 PE 4 SV 2
blastp_uniprot_sprot sp|P83643|UP12_ORYSI 42 286 + 245 Gaps:5 85.51 283 76.03 6e-123 Unknown protein DS12 from 2D-PAGE of leaf chloroplastic OS Oryza sativa subsp. indica GN OsI_027381 PE 1 SV 2
blastp_uniprot_sprot sp|Q9AC53|GLND_CAUCR 91 254 + 164 Gaps:16 17.02 940 30.00 5e-06 Bifunctional uridylyltransferase/uridylyl-removing enzyme OS Caulobacter crescentus (strain ATCC 19089 / CB15) GN glnD PE 3 SV 1
blastp_uniprot_sprot sp|B8GWX0|GLND_CAUCN 91 254 + 164 Gaps:16 17.02 940 30.00 5e-06 Bifunctional uridylyltransferase/uridylyl-removing enzyme OS Caulobacter crescentus (strain NA1000 / CB15N) GN glnD PE 3 SV 1
rpsblast_cdd gnl|CDD|32672 79 272 + 194 Gaps:11 21.57 867 25.13 2e-07 COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|166881 109 263 + 155 Gaps:14 16.87 895 24.50 8e-07 PRK00275 glnD PII uridylyl-transferase Provisional.
rpsblast_cdd gnl|CDD|162491 73 253 + 181 Gaps:8 20.82 850 22.03 1e-06 TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue but the modification site is preserved in the PII homolog of all species with a member of this family.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 2 12 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 1 286 286 PTHR31096 none none none
ProSiteProfiles 209 286 78 PS51671 none ACT domain profile. IPR002912
ProSiteProfiles 94 174 81 PS51671 none ACT domain profile. IPR002912
Gene3D 209 258 50 G3DSA:3.30.70.260 none none none
PANTHER 1 286 286 PTHR31096:SF8 none none none
Phobius 13 17 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 17 17 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 18 286 269 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 65   Mitochondrion 4 0.104 0.560 NON-PLANT 65