Protein : Qrob_P0005180.2 Q. robur
Protein Identifier  ? Qrob_P0005180.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K10839 - UV excision repair protein RAD23 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 337  
Kegg Orthology  K10839
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006289 nucleotide-excision repair A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
GO:0003684 damaged DNA binding Interacting selectively and non-covalently with damaged DNA.
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_029286 1 336 + 336 Gaps:41 100.00 373 76.68 0.0 Rad23 UV excision repair protein family isoform 1
blastp_kegg lcl|fve:101293607 1 336 + 336 Gaps:43 100.00 371 75.47 0.0 putative DNA repair protein RAD23-1-like
blastp_kegg lcl|pper:PRUPE_ppa007284mg 1 336 + 336 Gaps:42 100.00 374 75.40 0.0 hypothetical protein
blastp_kegg lcl|pmum:103328242 1 336 + 336 Gaps:42 100.00 374 75.40 0.0 ubiquitin receptor RAD23b-like
blastp_kegg lcl|cit:102620700 1 336 + 336 Gaps:41 100.00 377 75.33 0.0 ubiquitin receptor RAD23b-like
blastp_kegg lcl|pxb:103955100 1 336 + 336 Gaps:42 100.00 374 74.87 0.0 ubiquitin receptor RAD23b-like
blastp_kegg lcl|pvu:PHAVU_010G163300g 1 336 + 336 Gaps:35 100.00 371 72.24 0.0 hypothetical protein
blastp_kegg lcl|mdm:103405525 1 336 + 336 Gaps:45 100.00 369 73.71 0.0 ubiquitin receptor RAD23b-like
blastp_kegg lcl|pxb:103960249 1 336 + 336 Gaps:49 100.00 369 73.98 0.0 ubiquitin receptor RAD23b
blastp_kegg lcl|pxb:103945402 1 336 + 336 Gaps:49 100.00 369 73.98 0.0 ubiquitin receptor RAD23b-like
blastp_pdb 1qze_A 1 336 + 336 Gaps:58 97.83 368 38.89 1e-63 mol:protein length:368 UV excision repair protein RAD23 homolog A
blastp_pdb 1oqy_A 1 336 + 336 Gaps:58 97.83 368 38.89 1e-63 mol:protein length:368 UV excision repair protein RAD23 homolog A
blastp_pdb 1uel_A 1 90 + 90 Gaps:2 92.63 95 42.05 3e-17 mol:protein length:95 UV excision repair protein RAD23 homolog B
blastp_pdb 2qsh_X 198 333 + 136 Gaps:23 92.98 171 32.70 2e-15 mol:protein length:171 UV excision repair protein RAD23
blastp_pdb 2qsg_X 198 333 + 136 Gaps:23 92.98 171 32.70 2e-15 mol:protein length:171 UV excision repair protein RAD23
blastp_pdb 2qsf_X 198 333 + 136 Gaps:23 92.98 171 32.70 2e-15 mol:protein length:171 UV excision repair protein RAD23
blastp_pdb 1p1a_A 1 81 + 81 none 95.29 85 41.98 4e-15 mol:protein length:85 UV excision repair protein RAD23 homolog B
blastp_pdb 1p9d_U 1 76 + 76 none 97.44 78 39.47 5e-13 mol:protein length:78 UV excision repair protein RAD23 homolog A
blastp_pdb 1p98_A 1 76 + 76 none 97.44 78 39.47 5e-13 mol:protein length:78 UV excision repair protein RAD23 homolog A
blastp_pdb 2wyq_A 1 76 + 76 none 89.41 85 39.47 1e-12 mol:protein length:85 UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A
blastp_uniprot_sprot sp|Q84L33|RD23B_ARATH 1 336 + 336 Gaps:45 100.00 371 68.73 6e-171 Ubiquitin receptor RAD23b OS Arabidopsis thaliana GN RAD23B PE 1 SV 3
blastp_uniprot_sprot sp|Q84L32|RD23A_ARATH 1 336 + 336 Gaps:64 100.00 368 63.04 5e-155 Probable ubiquitin receptor RAD23a OS Arabidopsis thaliana GN RAD23A PE 1 SV 2
blastp_uniprot_sprot sp|Q84L30|RD23D_ARATH 1 336 + 336 Gaps:49 99.74 378 56.76 4e-131 Ubiquitin receptor RAD23d OS Arabidopsis thaliana GN RAD23D PE 1 SV 2
blastp_uniprot_sprot sp|Q84L31|RD23C_ARATH 1 336 + 336 Gaps:87 100.00 419 50.36 1e-120 Ubiquitin receptor RAD23c OS Arabidopsis thaliana GN RAD23C PE 1 SV 2
blastp_uniprot_sprot sp|Q40742|RAD23_ORYSJ 1 336 + 336 Gaps:54 98.98 392 50.77 8e-113 Probable ubiquitin receptor RAD23 OS Oryza sativa subsp. japonica GN RAD23 PE 1 SV 2
blastp_uniprot_sprot sp|P54728|RD23B_MOUSE 1 333 + 333 Gaps:87 99.52 416 34.30 2e-64 UV excision repair protein RAD23 homolog B OS Mus musculus GN Rad23b PE 1 SV 2
blastp_uniprot_sprot sp|P54727|RD23B_HUMAN 1 333 + 333 Gaps:102 99.51 409 35.14 2e-63 UV excision repair protein RAD23 homolog B OS Homo sapiens GN RAD23B PE 1 SV 1
blastp_uniprot_sprot sp|P54725|RD23A_HUMAN 3 336 + 334 Gaps:58 98.62 363 39.11 4e-63 UV excision repair protein RAD23 homolog A OS Homo sapiens GN RAD23A PE 1 SV 1
blastp_uniprot_sprot sp|Q4KMA2|RD23B_RAT 1 333 + 333 Gaps:88 99.52 415 33.90 7e-63 UV excision repair protein RAD23 homolog B OS Rattus norvegicus GN Rad23b PE 1 SV 1
blastp_uniprot_sprot sp|A3KMV2|RD23A_BOVIN 3 336 + 334 Gaps:61 98.62 362 39.22 5e-62 UV excision repair protein RAD23 homolog A OS Bos taurus GN RAD23A PE 2 SV 1

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 208 252 45 SM00727 none Heat shock chaperonin-binding motif. IPR006636
SUPERFAMILY 271 333 63 SSF46934 none none IPR009060
SMART 1 75 75 SM00213 none Ubiquitin homologues IPR000626
TIGRFAM 1 198 198 TIGR00601 none rad23: UV excision repair protein Rad23 IPR004806
PRINTS 237 259 23 PR01839 none DNA repair protein Rad23 signature IPR004806
PRINTS 286 302 17 PR01839 none DNA repair protein Rad23 signature IPR004806
PRINTS 318 333 16 PR01839 none DNA repair protein Rad23 signature IPR004806
PRINTS 303 317 15 PR01839 none DNA repair protein Rad23 signature IPR004806
SMART 135 175 41 SM00165 none Ubiquitin associated domain IPR015940
SMART 292 329 38 SM00165 none Ubiquitin associated domain IPR015940
Pfam 136 173 38 PF00627 none UBA/TS-N domain IPR000449
Pfam 293 327 35 PF00627 none UBA/TS-N domain IPR000449
ProSiteProfiles 290 330 41 PS50030 none Ubiquitin-associated domain (UBA) profile. IPR015940
Pfam 6 75 70 PF00240 none Ubiquitin family IPR000626
Gene3D 214 273 60 G3DSA:1.10.10.540 none none IPR015360
PANTHER 2 336 335 PTHR10621 none none none
SUPERFAMILY 1 87 87 SSF54236 none none IPR029071
Pfam 216 268 53 PF09280 none XPC-binding domain IPR015360
Gene3D 289 334 46 G3DSA:1.10.8.10 none none none
Gene3D 128 179 52 G3DSA:1.10.8.10 none none none
PANTHER 2 336 335 PTHR10621:SF5 none none none
ProSiteProfiles 1 79 79 PS50053 none Ubiquitin domain profile. IPR000626
ProSiteProfiles 133 176 44 PS50030 none Ubiquitin-associated domain (UBA) profile. IPR015940
SUPERFAMILY 209 274 66 SSF101238 none none IPR015360
SUPERFAMILY 132 183 52 SSF46934 none none IPR009060
Gene3D 1 78 78 G3DSA:3.10.20.90 none none none

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting