Protein : Qrob_P0004170.2 Q. robur
Protein Identifier  ? Qrob_P0004170.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=12) PTHR32468:SF12 - CATION/H(+) ANTIPORTER 26-RELATED (PTHR32468:SF12) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 819  
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0005451 monovalent cation:proton antiporter activity Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: monovalent cation(out) + H+(in) = monovalent cation(in) + H+(out).
GO:0006813 potassium ion transport The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0006814 sodium ion transport The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0006812 cation transport The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0015299 solute:proton antiporter activity Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out).

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103427504 14 816 + 803 Gaps:48 96.53 807 44.93 0.0 cation/H(+) antiporter 15-like
blastp_kegg lcl|pxb:103958695 10 816 + 807 Gaps:37 97.15 807 44.52 0.0 cation/H(+) antiporter 15-like
blastp_kegg lcl|pmum:103333054 26 813 + 788 Gaps:33 94.46 812 43.94 0.0 cation/H(+) antiporter 15-like
blastp_kegg lcl|pper:PRUPE_ppa023230mg 26 813 + 788 Gaps:32 94.46 813 43.23 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_042429 36 813 + 778 Gaps:39 94.78 786 43.22 0.0 K(+)/H(+) antiporter putative
blastp_kegg lcl|pper:PRUPE_ppa027037mg 4 812 + 809 Gaps:42 98.11 794 42.23 0.0 hypothetical protein
blastp_kegg lcl|pmum:103333055 4 815 + 812 Gaps:41 97.62 800 42.38 0.0 cation/H(+) antiporter 15-like
blastp_kegg lcl|pper:PRUPE_ppa026198mg 34 816 + 783 Gaps:34 94.68 808 41.44 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_042430 35 814 + 780 Gaps:59 94.01 784 42.61 0.0 K(+)/H(+) antiporter putative
blastp_kegg lcl|rcu:RCOM_0660940 26 814 + 789 Gaps:45 95.82 789 41.27 0.0 K(+)/H(+) antiporter putative
blastp_uniprot_sprot sp|Q9SIT5|CHX15_ARATH 22 816 + 795 Gaps:35 95.25 821 36.70 1e-151 Cation/H(+) antiporter 15 OS Arabidopsis thaliana GN CHX15 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FFR9|CHX18_ARATH 19 816 + 798 Gaps:35 97.16 810 31.89 2e-108 Cation/H(+) antiporter 18 OS Arabidopsis thaliana GN CHX18 PE 2 SV 1
blastp_uniprot_sprot sp|Q1HDT2|CHX24_ARATH 26 818 + 793 Gaps:73 92.43 859 30.73 9e-107 Cation/H(+) antiporter 24 OS Arabidopsis thaliana GN CHX24 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FGH6|CHX25_ARATH 26 815 + 790 Gaps:77 92.07 857 31.43 8e-105 Cation/H(+) antiporter 25 OS Arabidopsis thaliana GN CHX25 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SUQ7|CHX17_ARATH 34 813 + 780 Gaps:56 95.12 820 31.54 9e-104 Cation/H(+) antiporter 17 OS Arabidopsis thaliana GN CHX17 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LMJ1|CHX14_ARATH 26 816 + 791 Gaps:60 91.80 829 32.72 2e-102 Cation/H(+) antiporter 14 OS Arabidopsis thaliana GN CHX14 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M353|CHX20_ARATH 34 799 + 766 Gaps:83 93.94 842 30.72 4e-98 Cation/H(+) antiporter 20 OS Arabidopsis thaliana GN CHX20 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LUN4|CHX19_ARATH 34 674 + 641 Gaps:23 80.25 800 32.09 2e-97 Cation/H(+) antiporter 19 OS Arabidopsis thaliana GN CHX19 PE 2 SV 1
blastp_uniprot_sprot sp|Q1HDT3|CHX16_ARATH 34 816 + 783 Gaps:70 95.07 811 31.13 1e-96 Cation/H(+) antiporter 16 OS Arabidopsis thaliana GN CHX16 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VYD4|CHX23_ARATH 31 801 + 771 Gaps:67 86.97 867 33.42 1e-96 Cation/H(+) antiporter 23 chloroplastic OS Arabidopsis thaliana GN CHX23 PE 1 SV 1
rpsblast_cdd gnl|CDD|178704 9 813 + 805 Gaps:33 95.43 832 36.65 1e-151 PLN03159 PLN03159 cation/H(+) antiporter 15 Provisional.
rpsblast_cdd gnl|CDD|201544 56 443 + 388 Gaps:24 100.00 370 24.05 4e-36 pfam00999 Na_H_Exchanger Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family.
rpsblast_cdd gnl|CDD|30823 52 446 + 395 Gaps:22 95.47 397 21.64 4e-30 COG0475 KefB Kef-type K+ transport systems membrane components [Inorganic ion transport and metabolism].
rpsblast_cdd gnl|CDD|162117 68 349 + 282 Gaps:33 97.07 273 23.40 7e-13 TIGR00932 2a37 transporter monovalent cation:proton antiporter-2 (CPA2) family.
rpsblast_kog gnl|CDD|36863 34 801 + 768 Gaps:44 97.27 769 35.29 1e-136 KOG1650 KOG1650 KOG1650 Predicted K+/H+-antiporter [Inorganic ion transport and metabolism].

33 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 411 421 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 347 357 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 261 279 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 132 142 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 211 234 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 143 166 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 442 818 377 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 297 301 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Coils 693 716 24 Coil none none none
Phobius 380 390 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 240 260 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 109 131 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 328 346 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 691 801 111 PTHR32468 none none none
PANTHER 18 675 658 PTHR32468 none none none
Phobius 422 441 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 98 108 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 235 239 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 178 199 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 391 410 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 200 210 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 358 379 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 77 97 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 71 76 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 58 440 383 PF00999 none Sodium/hydrogen exchanger family IPR006153
Phobius 302 321 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 47 47 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 322 327 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 280 296 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 167 177 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

12 Localization

Analysis Start End Length
TMHMM 392 409 17
TMHMM 303 325 22
TMHMM 238 260 22
TMHMM 78 97 19
TMHMM 422 441 19
TMHMM 178 199 21
TMHMM 141 163 22
TMHMM 49 71 22
TMHMM 212 234 22
TMHMM 280 299 19
TMHMM 360 382 22
TMHMM 107 129 22

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting