Protein : Qrob_P0004160.2 Q. robur
Protein Identifier  ? Qrob_P0004160.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=12) PTHR32468:SF12 - CATION/H(+) ANTIPORTER 26-RELATED (PTHR32468:SF12) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 822  
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0005451 monovalent cation:proton antiporter activity Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: monovalent cation(out) + H+(in) = monovalent cation(in) + H+(out).
GO:0006813 potassium ion transport The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0006814 sodium ion transport The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0006812 cation transport The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0015299 solute:proton antiporter activity Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out).

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103333054 22 813 + 792 Gaps:38 94.33 812 44.91 0.0 cation/H(+) antiporter 15-like
blastp_kegg lcl|mdm:103427504 23 821 + 799 Gaps:49 95.42 807 44.16 0.0 cation/H(+) antiporter 15-like
blastp_kegg lcl|pxb:103958695 23 821 + 799 Gaps:37 95.42 807 43.64 0.0 cation/H(+) antiporter 15-like
blastp_kegg lcl|pper:PRUPE_ppa027037mg 4 813 + 810 Gaps:52 97.48 794 43.67 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa023230mg 22 813 + 792 Gaps:37 94.34 813 44.20 0.0 hypothetical protein
blastp_kegg lcl|pmum:103333055 4 813 + 810 Gaps:51 96.62 800 43.34 0.0 cation/H(+) antiporter 15-like
blastp_kegg lcl|tcc:TCM_042429 32 817 + 786 Gaps:46 95.17 786 42.78 0.0 K(+)/H(+) antiporter putative
blastp_kegg lcl|pper:PRUPE_ppa026198mg 30 814 + 785 Gaps:43 94.31 808 40.55 0.0 hypothetical protein
blastp_kegg lcl|mtr:MTR_3g071870 29 817 + 789 Gaps:39 93.35 827 40.93 0.0 Cation proton exchanger
blastp_kegg lcl|fve:101307260 57 814 + 758 Gaps:43 96.92 746 42.05 0.0 cation/H(+) antiporter 15-like
blastp_uniprot_sprot sp|Q9SIT5|CHX15_ARATH 18 814 + 797 Gaps:40 94.88 821 35.69 2e-143 Cation/H(+) antiporter 15 OS Arabidopsis thaliana GN CHX15 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LMJ1|CHX14_ARATH 22 814 + 793 Gaps:61 91.44 829 33.91 2e-108 Cation/H(+) antiporter 14 OS Arabidopsis thaliana GN CHX14 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FFR9|CHX18_ARATH 23 801 + 779 Gaps:37 94.32 810 30.50 5e-104 Cation/H(+) antiporter 18 OS Arabidopsis thaliana GN CHX18 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FGH6|CHX25_ARATH 33 817 + 785 Gaps:79 90.78 857 30.21 5e-103 Cation/H(+) antiporter 25 OS Arabidopsis thaliana GN CHX25 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SUQ7|CHX17_ARATH 23 819 + 797 Gaps:69 96.83 820 31.74 1e-102 Cation/H(+) antiporter 17 OS Arabidopsis thaliana GN CHX17 PE 1 SV 1
blastp_uniprot_sprot sp|Q1HDT2|CHX24_ARATH 33 817 + 785 Gaps:79 90.80 859 30.51 2e-102 Cation/H(+) antiporter 24 OS Arabidopsis thaliana GN CHX24 PE 2 SV 2
blastp_uniprot_sprot sp|Q8VYD4|CHX23_ARATH 35 814 + 780 Gaps:66 87.43 867 31.93 1e-95 Cation/H(+) antiporter 23 chloroplastic OS Arabidopsis thaliana GN CHX23 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M353|CHX20_ARATH 30 800 + 771 Gaps:82 93.94 842 30.47 3e-95 Cation/H(+) antiporter 20 OS Arabidopsis thaliana GN CHX20 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LUN4|CHX19_ARATH 23 670 + 648 Gaps:29 81.12 800 30.97 1e-92 Cation/H(+) antiporter 19 OS Arabidopsis thaliana GN CHX19 PE 2 SV 1
blastp_uniprot_sprot sp|O22920|CHX13_ARATH 22 814 + 793 Gaps:74 91.10 831 32.76 1e-90 Cation/H(+) symporter 13 OS Arabidopsis thaliana GN CHX13 PE 1 SV 1
rpsblast_cdd gnl|CDD|178704 17 814 + 798 Gaps:48 93.99 832 36.32 1e-142 PLN03159 PLN03159 cation/H(+) antiporter 15 Provisional.
rpsblast_cdd gnl|CDD|201544 52 436 + 385 Gaps:24 99.19 370 22.89 5e-30 pfam00999 Na_H_Exchanger Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family.
rpsblast_cdd gnl|CDD|30823 48 450 + 403 Gaps:22 97.48 397 20.16 2e-27 COG0475 KefB Kef-type K+ transport systems membrane components [Inorganic ion transport and metabolism].
rpsblast_cdd gnl|CDD|162117 65 345 + 281 Gaps:31 96.70 273 19.70 2e-10 TIGR00932 2a37 transporter monovalent cation:proton antiporter-2 (CPA2) family.
rpsblast_kog gnl|CDD|36863 30 802 + 773 Gaps:57 97.27 769 35.29 1e-132 KOG1650 KOG1650 KOG1650 Predicted K+/H+-antiporter [Inorganic ion transport and metabolism].

31 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 14 671 658 PTHR32468:SF12 none none IPR030153
Phobius 130 140 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 442 821 380 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 141 162 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 207 230 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 53 436 384 PF00999 none Sodium/hydrogen exchanger family IPR006153
Phobius 174 195 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Coils 699 720 22 Coil none none none
Phobius 67 72 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 265 275 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 276 306 31 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 163 173 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 418 441 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 343 353 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 73 90 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 43 43 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 196 206 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 407 417 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 44 66 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 386 406 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 231 241 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 326 342 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 110 129 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 354 380 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 242 264 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 307 325 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 91 109 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 692 814 123 PTHR32468:SF12 none none IPR030153
Phobius 381 385 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 692 814 123 PTHR32468 none none none

10 Localization

Analysis Start End Length
TMHMM 279 301 22
TMHMM 140 162 22
TMHMM 106 125 19
TMHMM 355 377 22
TMHMM 387 406 19
TMHMM 174 193 19
TMHMM 242 264 22
TMHMM 44 66 22
TMHMM 419 441 22
TMHMM 208 230 22

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting