Protein : Qrob_P0000690.2 Q. robur
Protein Identifier  ? Qrob_P0000690.2 Organism . Name  Quercus robur
Score  8.1 Score Type  egn
Protein Description  (M=1) KOG0354//KOG0701//KOG1817 - DEAD-box like helicase [General function prediction only]. // dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]. // Ribonuclease [RNA processing and modification]. Code Enzyme  EC:3.1.26.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 887  
Kegg Orthology  K11592
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004525 ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0010s18870g 1 873 + 873 Gaps:5 61.01 1408 69.38 0.0 POPTRDRAFT_770140 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10010912mg 1 872 + 872 Gaps:7 62.03 1396 70.44 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa000240mg 1 875 + 875 Gaps:49 62.54 1415 68.70 0.0 hypothetical protein
blastp_kegg lcl|pmum:103318814 1 875 + 875 Gaps:8 61.75 1396 71.69 0.0 endoribonuclease Dicer homolog 2
blastp_kegg lcl|pop:POPTR_0008s07580g 1 873 + 873 Gaps:56 61.65 1468 67.18 0.0 POPTRDRAFT_765644 hypothetical protein
blastp_kegg lcl|cit:102617691 1 872 + 872 Gaps:7 61.81 1401 69.52 0.0 endoribonuclease Dicer homolog 2-like
blastp_kegg lcl|cic:CICLE_v10010911mg 1 872 + 872 Gaps:7 61.81 1401 69.63 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_025106 1 876 + 876 Gaps:27 62.76 1418 67.87 0.0 Dicer-like protein isoform 1
blastp_kegg lcl|rcu:RCOM_1077610 19 876 + 858 Gaps:7 61.02 1388 68.60 0.0 ATP binding protein putative (EC:3.1.26.3)
blastp_kegg lcl|fve:101310243 3 875 + 873 Gaps:12 60.78 1433 67.39 0.0 endoribonuclease Dicer homolog 2-like
blastp_pdb 3c4t_A 627 872 + 246 Gaps:33 97.74 265 40.93 9e-40 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 3c4b_A 627 872 + 246 Gaps:33 97.74 265 40.93 9e-40 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 2eb1_C 636 798 + 163 Gaps:15 87.00 200 43.10 2e-33 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_B 636 798 + 163 Gaps:15 87.00 200 43.10 2e-33 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_A 636 798 + 163 Gaps:15 87.00 200 43.10 2e-33 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 4a36_B 17 184 + 168 Gaps:4 30.22 556 32.14 6e-18 mol:protein length:556 RETINOIC ACID INDUCIBLE PROTEIN I
blastp_pdb 4a36_A 17 184 + 168 Gaps:4 30.22 556 32.14 6e-18 mol:protein length:556 RETINOIC ACID INDUCIBLE PROTEIN I
blastp_pdb 4a2p_A 17 184 + 168 Gaps:4 30.22 556 32.14 6e-18 mol:protein length:556 RETINOIC ACID INDUCIBLE PROTEIN I
blastp_pdb 4a2w_B 17 184 + 168 Gaps:4 17.95 936 32.14 2e-17 mol:protein length:936 RETINOIC ACID INDUCIBLE PROTEIN I
blastp_pdb 4a2w_A 17 184 + 168 Gaps:4 17.95 936 32.14 2e-17 mol:protein length:936 RETINOIC ACID INDUCIBLE PROTEIN I
blastp_uniprot_sprot sp|Q3EBC8|DCL2_ARATH 1 875 + 875 Gaps:18 61.38 1388 62.91 0.0 Endoribonuclease Dicer homolog 2 OS Arabidopsis thaliana GN At3g03300 PE 1 SV 2
blastp_uniprot_sprot sp|Q10HL3|DCL2A_ORYSJ 15 871 + 857 Gaps:28 61.49 1410 49.37 4e-148 Endoribonuclease Dicer homolog 2a OS Oryza sativa subsp. japonica GN DCL2A PE 2 SV 1
blastp_uniprot_sprot sp|Q69LX2|DCL2B_ORYSJ 15 871 + 857 Gaps:30 62.09 1377 49.59 7e-142 Endoribonuclease Dicer homolog 2b OS Oryza sativa subsp. japonica GN DCL2B PE 2 SV 2
blastp_uniprot_sprot sp|Q9SP32|DCL1_ARATH 17 882 + 866 Gaps:91 45.36 1909 37.30 5e-86 Endoribonuclease Dicer homolog 1 OS Arabidopsis thaliana GN DCL1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8LMR2|DCL1_ORYSJ 17 879 + 863 Gaps:121 43.60 1883 36.78 6e-85 Endoribonuclease Dicer homolog 1 OS Oryza sativa subsp. japonica GN DCL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q7XD96|DCL3B_ORYSJ 18 832 + 815 Gaps:57 44.72 1637 38.11 7e-81 Endoribonuclease Dicer homolog 3b OS Oryza sativa subsp. japonica GN DCL3B PE 3 SV 2
blastp_uniprot_sprot sp|A7LFZ6|DCL4_ORYSJ 6 874 + 869 Gaps:91 53.89 1657 36.84 9e-80 Endoribonuclease Dicer homolog 4 OS Oryza sativa subsp. japonica GN DCL4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXW7|DCL3_ARATH 19 873 + 855 Gaps:57 49.30 1580 36.71 1e-78 Endoribonuclease Dicer homolog 3 OS Arabidopsis thaliana GN DCL3 PE 1 SV 2
blastp_uniprot_sprot sp|P84634|DCL4_ARATH 4 880 + 877 Gaps:48 49.82 1702 35.61 1e-77 Dicer-like protein 4 OS Arabidopsis thaliana GN DCL4 PE 1 SV 2
blastp_uniprot_sprot sp|Q5N870|DCL3A_ORYSJ 18 873 + 856 Gaps:48 46.94 1651 36.13 1e-73 Endoribonuclease Dicer homolog 3a OS Oryza sativa subsp. japonica GN DCL3A PE 2 SV 1

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 465 597 133 PS50142 none Ribonuclease III family domain profile. IPR000999
PANTHER 12 320 309 PTHR14950 none none none
PANTHER 338 884 547 PTHR14950 none none none
ProSitePatterns 669 677 9 PS00517 none Ribonuclease III family signature. IPR000999
PANTHER 338 884 547 PTHR14950:SF19 none none none
SUPERFAMILY 15 187 173 SSF52540 none none IPR027417
Pfam 19 186 168 PF00270 none DEAD/DEAH box helicase IPR011545
Gene3D 632 799 168 G3DSA:1.10.1520.10 none none IPR000999
SMART 461 617 157 SM00535 none Ribonuclease III family IPR000999
SMART 648 803 156 SM00535 none Ribonuclease III family IPR000999
Pfam 479 596 118 PF00636 none Ribonuclease III domain IPR000999
Pfam 669 780 112 PF00636 none Ribonuclease III domain IPR000999
SUPERFAMILY 762 872 111 SSF54768 none none none
SUPERFAMILY 577 616 40 SSF69065 none none IPR000999
SUPERFAMILY 462 548 87 SSF69065 none none IPR000999
Coils 245 266 22 Coil none none none
ProSiteProfiles 633 780 148 PS50142 none Ribonuclease III family domain profile. IPR000999
SUPERFAMILY 632 726 95 SSF69065 none none IPR000999
SUPERFAMILY 754 801 48 SSF69065 none none IPR000999
Gene3D 9 184 176 G3DSA:3.40.50.300 none none IPR027417
SMART 13 223 211 SM00487 none DEAD-like helicases superfamily IPR014001
Gene3D 463 612 150 G3DSA:1.10.1520.10 none none IPR000999
PANTHER 12 320 309 PTHR14950:SF19 none none none
ProSiteProfiles 24 203 180 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting