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2008

14 Jan 2008 SNP tools training session (second)

SNP tools: GnpSnp, GenAlys

  • Program: Presentation of SNP tools from CNG and URGI to detect, store and query SNP data
  • 14 january 2008 (status = closed)
  • Length: 1 day
  • Schedule : 10:00 0 17:30
  • Location EVRY: Centre national de Genotypage, 2 rue Gaston Cremieux, RDC then INRA URGI, 523 place des terrasses de l'agora, first floor room Saphir (morning)
  • room Saphir at the beginning of afternoon for practical courses then at URGI
  • Program details: (course in french) matin:
  • La plateforme bioinformatique de l'URGI (Delphine Steinbach, INRA URGI), 30 minutes
  • Presentation de l'application de gestion des donnees de polymorphisme de sequences GnpSNP, (Fabienne Granier, Institut Jean-Pierre Bourguin INRA Versailles), 30 minutes
  • Alignement de sequences avec GenAlys, (Heather MacKhann, INRA EPGV), 30 minutes
  • apres-midi:
  • Alignement de sequences et mise en evidence des polymorphismes, generation des fichiers de sortie (Aurelie Berard/Pierre Mourmet, CNG)
  • Soumission d'un lot de donnees, utilisation de l'outil de soumission sur le web de l'URGI, (Fabienne Granier)
  • Navigation dans l'application GnpSNP, (Nacer Mohellibi, INRA URGI)
  • Requirements: Bring your labtop to do the practical sessions
  • You could bring your own sequences to align but it is not a necessity. You will come back with a CDROM with GenAlys software or the software directly installed on your labtop.
  • You need a URGI account : ask urgi-contact [AT] versailles.inra.fr to get one.

Animation: Nacer Mohellii, Delphine Steinbach


Creation date: 23 Jun 2010