CONTACT  |  SITE MAP  |  ABOUT US  |  TEAM   
Go to GnpIS Go to WheatIS Go to faidare Go to repet tool Go to RepetDB

Platform

You are here : Home / Home URGI / Platform / Publications

Publications

URGI members are underlined in authors list. In the talks sections, names in bold are the speakers.

There are different types of publications, Papers with reading comittee (ACL), Papers in books (ACT), Invited talks (INV), Talks (COM), Posters (COM), Specialised Media and Press (SMP) and Thesis.

Other
COM (communication)
 06 Dec 2024 [hal-04822964] PHENET-EMPHASIS Data Management Training
Training overview PHENET and EMPHASIS-GO communities share converging data management issues and needs. To this end, we organized a data management training course in Paris on 04, 05 and 06 December, open to the PHENET-EMPHASIS community. Pedagogical objectives At the end of this course, participants will have acquired theoretical and practical knowledge of : * the management of plant phenotyping data in accordance with FAIR principles * the use of plant community (meta)data standards. They will also have standardised a dataset in MIAPPE format and identified ways of improving the management of their data. This training was organised by PHENET and EMPHASIS with support from URGI. Link to the Training Website: https://moodle.france-bioinformatique.fr/course/view.php?id=31& et al.
In ProdINRA
...
COM (communication)
 06 Dec 2024 [hal-04822902] AGENT Guidelines for dataflow
The AGENT project aims at integrating data from different sources (genebanks, research institutes, international archives) and types (passport, phenotypic, genomic data). These guidelines have been developed to explain the data flow within the AGENT project and should be useful for other projects.
et al.
In ProdINRA
...
COM (communication)
 25 Oct 2024 [hal-04739711] Atelier « L'IA en pratique: de la perception à l'application »
[...]
et al.
In ProdINRA
...
COM (communication)
 23 Oct 2024 [hal-04750756] Eclairages sur l'infrastructure de recherche RARe
Cet article présente l'Infrastructure de Recherche Nationale RARe (https://www.agrobrc-rare.org) en s'appuyant sur les communications parues dans la Lettre des Unités Expérimentales d'INRAE (LUE). Après une introduction générale de l'organisation de cette Infrastructure en cinq piliers de Centres de Ressources Biologiques, les communications apportent des éclairages sur la complémentarité entre RARe et les unités expérimentales, sur l'organisation du pilier 'plante' et sur quelques exemples de ses activités, avant de terminer sur le modèle économique de l'ensemble.
et al.
In ProdINRA
...
COM (communication)
 12 Oct 2024 [hal-04733449] A Benchmark for Transposable Element annotation tools
[...]
et al.
In ProdINRA
...
COM (communication)
 12 Oct 2024 [hal-04733446] The Brachypodium distachyon pangenome highlights Transposable Element dynamics in the species
Abstract The role of transposable elements (TEs) in host adaptation can be explored with a pangenomic approach. Individuals of the same species undergo independent TE insertions, causing genetic variability upon which natural selection acts. This can lead to improved adaptation of individuals to their environment. The advent of third-generation sequencing has enabled use of multiple whole-genome de novo assemblies for a given species, avoiding bias introduced by a single reference genome. We developed a new pipeline, panREPET, for such data. It compares TE copies between each pair of individuals then identifies copies shared by a group of individuals. This gives the exact sequence and genomic context of each TE copy. We describe here TE insertions shared among 54 Brachypodium distachyo n genomes. We were able to date two major TE bursts corresponding to major climate events: 22 kya during the Last Glacial Maximum and 10 kya during the Holocene.
et al.
In ProdINRA
...
« Previous 1 2 3 4 5 6 7 8 9 10 11 ... 17 Next  »
Update: 19 Nov 2010
Creation date: 01 Dec 2009