GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_uP047850.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	aor:AO090026000762	2	70	69	n/a	7.03	981	59.42	13.04	3e-22	acyl-CoA oxidase
	uma:UM02208.1	3	71	69	n/a	10.03	688	50.72	17.39	6e-17	hypothetical protein
	cre:CHLREDRAFT_121379	3	71	69	n/a	10.38	665	49.28	11.59	1e-13	hypothetical protein K00232 acyl-CoA oxidase [EC:1.3.3.6]
	rno:50681	3	71	69	n/a	10.44	661	44.93	14.49	9e-13	Acox1 acyl-Coenzyme A oxidase 1 palmitoyl (EC:1.3.3.6) K00232 acyl-CoA oxidase [EC:1.3.3.6]
	dre:449662	3	71	69	n/a	10.45	660	43.48	13.04	2e-12	acox1 acyl-Coenzyme A oxidase 1 palmitoyl (EC:1.3.3.6) K00232 acyl-CoA oxidase [EC:1.3.3.6]
	mmu:11430	3	71	69	n/a	10.44	661	43.48	15.94	3e-12	Acox1 acyl-Coenzyme A oxidase 1 palmitoyl (EC:1.3.3.6) K00232 acyl-CoA oxidase [EC:1.3.3.6]
	tad:TRIADDRAFT_27680	3	71	69	n/a	10.50	657	43.48	8.70	4e-12	hypothetical protein
	tad:TRIADDRAFT_28074	3	71	69	n/a	10.49	658	43.48	8.70	4e-12	hypothetical protein K00232 acyl-CoA oxidase [EC:1.3.3.6]
	tad:TRIADDRAFT_38001	3	71	69	n/a	10.50	657	43.48	8.70	4e-12	hypothetical protein K00232 acyl-CoA oxidase [EC:1.3.3.6]
	mcc:705197	3	71	69	n/a	10.45	660	43.48	13.04	6e-12	ACOX1 acyl-Coenzyme A oxidase 1 palmitoyl K00232 acyl-CoA oxidase [EC:1.3.3.6]
blastp_uniprot_sprot	sp\|P07872\|ACOX1_RAT	3	71	69	n/a	10.44	661	44.93	14.49	1e-13	Peroxisomal acyl-coenzyme A oxidase 1 OS Rattus norvegicus GN Acox1 PE 1 SV 1
	sp\|Q9R0H0\|ACOX1_MOUSE	3	71	69	n/a	10.44	661	43.48	15.94	4e-13	Peroxisomal acyl-coenzyme A oxidase 1 OS Mus musculus GN Acox1 PE 1 SV 4
	sp\|Q9Z1N0\|ACOX1_CAVPO	3	71	69	n/a	10.44	661	43.48	14.49	4e-13	Peroxisomal acyl-coenzyme A oxidase 1 OS Cavia porcellus GN ACOX1 PE 2 SV 1
	sp\|Q5RC19\|ACOX1_PONAB	3	71	69	n/a	10.45	660	43.48	13.04	8e-13	Peroxisomal acyl-coenzyme A oxidase 1 OS Pongo abelii GN ACOX1 PE 2 SV 2
	sp\|Q15067\|ACOX1_HUMAN	3	71	69	n/a	10.45	660	43.48	13.04	8e-13	Peroxisomal acyl-coenzyme A oxidase 1 OS Homo sapiens GN ACOX1 PE 1 SV 3
	sp\|O65202\|ACOX1_ARATH	3	71	69	n/a	10.39	664	43.48	11.59	4e-12	Peroxisomal acyl-coenzyme A oxidase 1 OS Arabidopsis thaliana GN ACX1 PE 1 SV 1
	sp\|Q9ZQP2\|ACO12_ARATH	3	71	69	n/a	10.39	664	40.58	15.94	1e-11	Putative peroxisomal acyl-coenzyme A oxidase 1.2 OS Arabidopsis thaliana GN ACX1.2 PE 2 SV 1
	sp\|Q8HYL8\|ACOX1_PHACI	3	71	69	n/a	10.44	661	39.13	14.49	4e-11	Peroxisomal acyl-coenzyme A oxidase 1 OS Phascolarctos cinereus GN ACOX1 PE 1 SV 1
	sp\|Q9QXD1\|ACOX2_MOUSE	1	71	71	n/a	10.43	681	38.03	18.31	7e-11	Peroxisomal acyl-coenzyme A oxidase 2 OS Mus musculus GN Acox2 PE 1 SV 1
blastp_pdb	2ddh_A	3	71	69	n/a	10.44	661	44.93	14.49	2e-14	mol:protein length:661 Acyl-CoA oxidase
	1is2_B	3	71	69	n/a	10.44	661	44.93	14.49	2e-14	mol:protein length:661 acyl-CoA oxidase
	1is2_A	3	71	69	n/a	10.44	661	44.93	14.49	2e-14	mol:protein length:661 acyl-CoA oxidase
	2fon_C	3	71	69	n/a	10.10	683	43.48	13.04	6e-13	mol:protein length:683 peroxisomal acyl-CoA oxidase 1A
	2fon_B	3	71	69	n/a	10.10	683	43.48	13.04	6e-13	mol:protein length:683 peroxisomal acyl-CoA oxidase 1A
	2fon_A	3	71	69	n/a	10.10	683	43.48	13.04	6e-13	mol:protein length:683 peroxisomal acyl-CoA oxidase 1A
	1w07_B	3	71	69	n/a	10.47	659	43.48	11.59	8e-13	mol:protein length:659 ACYL-COA OXIDASE
	1w07_A	3	71	69	n/a	10.47	659	43.48	11.59	8e-13	mol:protein length:659 ACYL-COA OXIDASE
rpsblast_cdd	gnl\|CDD\|73248	2	75	74	Gaps:1	11.97	610	36.99	24.66	1e-13	cd01150 AXO Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation the alpha beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD which becomes reduced. In a second oxidative half-reaction the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids whereas the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase acts on 2-methyl branched fatty acids. AXO has an additional domain C-terminal to the region with similarity to acyl-CoA dehydrogenases which is included in this alignment..
	gnl\|CDD\|134043	21	39	19	n/a	3.90	487	31.58	15.79	2.1	PRK00029 PRK00029 hypothetical protein Validated.
	gnl\|CDD\|137038	33	64	32	Gaps:2	10.53	285	40.00	20.00	3.2	PRK09038 PRK09038 flagellar motor protein MotD Reviewed.
	gnl\|CDD\|118320	20	48	29	Gaps:2	8.54	316	55.56	7.41	4.2	pfam09789 DUF2353 Uncharacterized coiled-coil protein (DUF2353). Members of this family of uncharacterised proteins have no known function.
	gnl\|CDD\|116918	1	26	26	Gaps:5	5.76	538	29.03	25.81	5.5	pfam08337 Plexin_cytopl Plexin cytoplasmic region. This family features the C-terminal regions of various plexins. Plexins are receptors for semaphorins and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels. The cytoplasmic region which has been called a SEX domain in some members of this family is involved in downstream signalling pathways by interaction with proteins such as Rac1 RhoD Rnd1 and other plexins.
rpsblast_kog	gnl\|CDD\|35358	2	75	74	Gaps:1	10.90	670	42.47	17.81	6e-16	KOG0136 KOG0136 KOG0136 Acyl-CoA oxidase [Lipid transport and metabolism].
	gnl\|CDD\|35357	2	65	64	Gaps:2	9.38	661	30.65	20.97	1e-06	KOG0135 KOG0135 KOG0135 Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism Secondary metabolites biosynthesis transport and catabolism].
	gnl\|CDD\|36668	41	75	35	Gaps:2	10.54	313	33.33	9.09	0.069	KOG1455 KOG1455 KOG1455 Lysophospholipase [Lipid transport and metabolism].
	gnl\|CDD\|38308	3	25	23	n/a	4.99	461	43.48	26.09	2.9	KOG3098 KOG3098 KOG3098 Uncharacterized conserved protein [Function unknown].
	gnl\|CDD\|39780	2	50	49	Gaps:4	40.18	112	24.44	8.89	9.9	KOG4580 KOG4580 KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion [Intracellular trafficking secretion and vesicular transport Posttranslational modification protein turnover chaperones].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
blastx_uniprot_trembl	Q0CJ46	809922	810940	692	60.26	43.64	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
	Q0UT51	810378	811693	438	71.00	100.00	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q2UE49	809922	811214	981	49.22	39.14	n/a	Acyl-CoA oxidase - Aspergillus oryzae
	Q5AY78	810273	811666	696	40.00	65.37	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	Q1DRG6	810273	811627	693	38.96	66.67	n/a	Putative uncharacterized protein - Coccidioides immitis
	Q0CJ26	810273	811627	693	38.57	64.36	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
	A1CDU2	810273	811627	692	37.98	64.31	n/a	Acyl-CoA oxidase - Aspergillus clavatus
	Q2USC8	810273	811627	694	38.12	64.27	n/a	Acyl-CoA oxidase - Aspergillus oryzae
	Q5AY65	809852	811693	695	38.94	78.71	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	Q1E6D9	810650	811534	328	44.56	89.63	n/a	Putative uncharacterized protein - Coccidioides immitis
blastx_FNG31_prot	SNU05259.1	810273	810943	663	41.42	36.05	n/a	Stagonospora nodorum hypothetical protein translation
	RO3G_10134.1	810270	810934	695	38.50	30.65	n/a	rhizopus_oryzae hypothetical protein translation 696 aa
	SNU05063.1	809576	811693	658	68.27	97.72	n/a	Stagonospora nodorum hypothetical protein translation
	AO090026000762	809922	811214	981	49.22	39.14	n/a	Aspergillus oryzae acyl-CoA oxidase
	AN6752	810273	811666	696	40.00	65.37	n/a	Aspergillus nidulans AN6752.3 conserved hypothetical protein translation 697 aa
	CIMG_07097.2	810273	811627	693	38.96	66.67	n/a	Coccidioides immitis hypothetical protein translation 694 aa
	AO090005000479	810273	811627	694	38.12	64.27	n/a	Aspergillus oryzae acyl-CoA oxidase
	AN6765	809852	811693	695	38.94	78.71	n/a	Aspergillus nidulans AN6765.3 conserved hypothetical protein translation 696 aa
	CIMG_01874.2	810650	811534	328	44.56	89.63	n/a	Coccidioides immitis hypothetical protein translation 329 aa
	FG02287.1	810273	811088	696	37.01	40.37	n/a	fusarium_graminearum hypothetical protein 697 aa
blat_BES	QS0AAD41ZA10FM1	810922	811499	755	n/a	n/a	n/a	n/a
blat_BES	QS0AAD53ZE09FM1	810780	811499	788	n/a	n/a	n/a	n/a
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_05259.2:gb:EAT87650	810273	810943	392	41.42	60.97	n/a	n/a
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_05063.2:gb:EAT87454	810378	811693	438	71.00	100.00	n/a	n/a
RepeatMasker_SR	no results
RepeatMasker_LC	no results
sim4_Lm_allest	no results
sim4_lm_allest6_clctg	no results
sim4_cDNA_BHowlett	no results
blastx_uniprot_sprot	P07872	810273	810910	661	38.81	30.41	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Rattus norvegicus (Rat)
	Q9R0H0	810273	810910	661	38.31	30.41	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Mus musculus (Mouse)
	Q15067	810273	810910	660	38.31	30.45	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Homo sapiens (Human)
	Q9ZQP2	810270	810934	664	38.18	33.13	n/a	Putative acyl-coenzyme A oxidase 1.2 peroxisomal - Arabidopsis thaliana (Mouse-ear cress)
	Q9Z1N0	810273	810910	661	38.31	30.41	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Cavia porcellus (Guinea pig)
	Q5RC19	810273	810910	660	37.81	30.45	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Pongo pygmaeus (Orangutan)
	Q8HYL8	810273	810910	661	37.81	30.41	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Phascolarctos cinereus (Koala)
	O65202	810270	810934	664	39.07	32.38	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Arabidopsis thaliana (Mouse-ear cress)
	Q9QXD1	810273	810910	681	38.61	29.66	n/a	Acyl-coenzyme A oxidase 2 peroxisomal - Mus musculus (Mouse)
	Q3SZP5	810273	810910	660	36.32	30.45	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Bos taurus (Bovine)
REPET	no results
MUMer_show_coords_lm_WA74	no results